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    HP1BP3 heterochromatin protein 1 binding protein 3 [ Gallus gallus (chicken) ]

    Gene ID: 425543, updated on 3-Dec-2024

    Summary

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    Symbol
    HP1BP3provided by CGNC
    Full Name
    heterochromatin protein 1 binding protein 3provided by CGNC
    Primary source
    CGNC:7661
    See related
    Ensembl:ENSGALG00010017018
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See HP1BP3 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (6711999..6732008)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (6746824..6766839)

    Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112530142 Neighboring gene endothelin converting enzyme 1 Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene uncharacterized LOC121107401 Neighboring gene uncharacterized LOC121107400 Neighboring gene SH2 domain containing 5 Neighboring gene kinesin family member 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heterochromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterochromatin protein 1-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006560.2 → NP_001006560.2  heterochromatin protein 1-binding protein 3

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000329
      UniProtKB/Swiss-Prot
      Q5ZM33
      UniProtKB/TrEMBL
      F1N8H6
      Related
      ENSGALP00010024055.1, ENSGALT00010041110.1
      Conserved Domains (4) summary
      smart00526
      Location:343 → 403
      H15; Domain in histone families 1 and 5
      PHA03378
      Location:460 → 553
      PHA03378; EBNA-3B; Provisional
      PRK13108
      Location:21 → 138
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      cd00073
      Location:156 → 243
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6711999..6732008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040651200.2 → XP_040507134.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZM33
      UniProtKB/TrEMBL
      F1N8H6
      Conserved Domains (4) summary
      smart00526
      Location:343 → 403
      H15; Domain in histone families 1 and 5
      PHA03378
      Location:460 → 553
      PHA03378; EBNA-3B; Provisional
      PRK13108
      Location:21 → 138
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      cd00073
      Location:156 → 243
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

    2. XM_040651199.2 → XP_040507133.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZM33
      UniProtKB/TrEMBL
      F1N8H6
      Conserved Domains (4) summary
      smart00526
      Location:343 → 403
      H15; Domain in histone families 1 and 5
      PHA03378
      Location:460 → 553
      PHA03378; EBNA-3B; Provisional
      PRK13108
      Location:21 → 138
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      cd00073
      Location:156 → 243
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

    3. XM_015297255.4 → XP_015152741.1  heterochromatin protein 1-binding protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZM33
      Conserved Domains (2) summary
      cd00073
      Location:118 → 205
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
      pfam00538
      Location:305 → 374
      Linker_histone; linker histone H1 and H5 family

    4. XM_046903174.1 → XP_046759130.1  heterochromatin protein 1-binding protein 3 isoform X3

    5. XM_040651202.2 → XP_040507136.1  heterochromatin protein 1-binding protein 3 isoform X4

      Conserved Domains (3) summary
      smart00526
      Location:259 → 320
      H15; Domain in histone families 1 and 5
      PRK13108
      Location:21 → 138
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      cd00073
      Location:156 → 243
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

    6. XM_040651198.2 → XP_040507132.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZM33
      UniProtKB/TrEMBL
      F1N8H6
      Related
      ENSGALP00010024051.1, ENSGALT00010041105.1
      Conserved Domains (4) summary
      smart00526
      Location:343 → 403
      H15; Domain in histone families 1 and 5
      PHA03378
      Location:460 → 553
      PHA03378; EBNA-3B; Provisional
      PRK13108
      Location:21 → 138
      PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
      cd00073
      Location:156 → 243
      H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6746824..6766839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046931353.1 → XP_046787309.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZM33
      UniProtKB/TrEMBL
      F1N8H6

    2. XM_046931354.1 → XP_046787310.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZM33
      UniProtKB/TrEMBL
      F1N8H6

    3. XM_046931355.1 → XP_046787311.1  heterochromatin protein 1-binding protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q5ZM33

    4. XM_046931356.1 → XP_046787312.1  heterochromatin protein 1-binding protein 3 isoform X3

    5. XM_046931357.1 → XP_046787313.1  heterochromatin protein 1-binding protein 3 isoform X4

    6. XM_046931352.1 → XP_046787308.1  heterochromatin protein 1-binding protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZM33
      UniProtKB/TrEMBL
      F1N8H6
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZM33.1 GenPept UniProtKB/Swiss-Prot:Q5ZM33

    Gene LinkOut

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