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    PDE6D phosphodiesterase 6D [ Gallus gallus (chicken) ]

    Gene ID: 424932, updated on 3-Dec-2024

    Summary

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    Symbol
    PDE6Dprovided by CGNC
    Full Name
    phosphodiesterase 6Dprovided by CGNC
    Primary source
    CGNC:5855
    See related
    Ensembl:ENSGALG00010015684
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PDE6D in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (15037460..15067714, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (14830711..14861316, complement)

    Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene nucleolin Neighboring gene neuromedin U receptor 1 Neighboring gene uncharacterized LOC121111472 Neighboring gene prothymosin, alpha Neighboring gene COP9 signalosome subunit 7B Neighboring gene natriuretic peptide C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sensory perception of light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta
    Names
    phosphodiesterase 6D, cGMP-specific, rod, delta
    XP_015146985.1
    XP_040534644.1
    XP_046754780.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      15037460..15067714 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015291499.4 → XP_015146985.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X1

      UniProtKB/TrEMBL
      A0A1D5P2A3, A0A8V0YLI0
      Related
      ENSGALP00010021817.1, ENSGALT00010037771.1
      Conserved Domains (1) summary
      pfam05351
      Location:10 → 149
      GMP_PDE_delta; GMP-PDE, delta subunit

    2. XM_046898824.1 → XP_046754780.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X2

      UniProtKB/TrEMBL
      A0A8V0YLI0
      Related
      ENSGALP00010021813.1, ENSGALT00010037765.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      14830711..14861316 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040678710.2 → XP_040534644.1  retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X1

      UniProtKB/TrEMBL
      A0A1D5P2A3, A0A8V0YLI0
      Conserved Domains (1) summary
      pfam05351
      Location:10 → 149
      GMP_PDE_delta; GMP-PDE, delta subunit

    RNA

    1. XR_005852446.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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