C2H6orf52 chromosome 2 C6orf52 homolog [Gallus gallus (chicken)] - Gene

Summary

Official Symbol: C2H6orf52provided by CGNC
Official Full Name: chromosome 2 C6orf52 homologprovided by CGNC
Primary source: CGNC:51351
See related: Ensembl:ENSGALG00010009741
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: TRNAU1AP
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Genomic context

Location:: chromosome: 2

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	2	NC_052533.1 (61819549..61833094, complement)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	2	NC_052574.1 (61768494..61782017, complement)

Chromosome 2 - NC_052533.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: tRNA selenocysteine 1-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001252015.2 → NP_001238944.1 tRNA selenocysteine 1-associated protein 1 isoform 2

See identical proteins and their annotated locations for NP_001238944.1

Status: VALIDATED

Source sequence(s)

JAENSK010000040

UniProtKB/TrEMBL

A0A1D5NX87

Conserved Domains (2) summary

pfam17654
Location:161 → 258

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cd12612
Location:54 → 135

RRM2_SECp43; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43)
NM_001396341.1 → NP_001383270.1 tRNA selenocysteine 1-associated protein 1 isoform 1

Status: VALIDATED

Source sequence(s)

JAENSK010000040

Conserved Domains (2) summary

pfam17654
Location:167 → 264

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cd12612
Location:60 → 141

RRM2_SECp43; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43)
NM_001396342.1 → NP_001383271.1 tRNA selenocysteine 1-associated protein 1 isoform 1

Status: VALIDATED

Source sequence(s)

JAENSK010000040

Conserved Domains (2) summary

pfam17654
Location:167 → 264

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cd12612
Location:60 → 141

RRM2_SECp43; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43)
NM_001396343.1 → NP_001383272.1 tRNA selenocysteine 1-associated protein 1 isoform 2

Status: VALIDATED

Source sequence(s)

JAENSK010000040

UniProtKB/TrEMBL

A0A1D5NX87

Conserved Domains (2) summary

pfam17654
Location:161 → 258

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cd12612
Location:54 → 135

RRM2_SECp43; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43)
NM_001396344.1 → NP_001383273.1 tRNA selenocysteine 1-associated protein 1 isoform 2

Status: VALIDATED

Source sequence(s)

JAENSK010000040

UniProtKB/TrEMBL

A0A1D5NX87

Related

ENSGALP00010013465.1, ENSGALT00010023274.1

Conserved Domains (2) summary

pfam17654
Location:161 → 258

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cd12612
Location:54 → 135

RRM2_SECp43; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43)
NM_001396345.1 → NP_001383274.1 tRNA selenocysteine 1-associated protein 1 isoform 2

Status: VALIDATED

Source sequence(s)

JAENSK010000040

Conserved Domains (2) summary

pfam17654
Location:94 → 218

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cl17169
Location:54 → 96

RRM_SF; RNA recognition motif (RRM) superfamily
NM_001396346.1 → NP_001383275.1 tRNA selenocysteine 1-associated protein 1 isoform 2

Status: VALIDATED

Source sequence(s)

JAENSK010000040

Conserved Domains (2) summary

pfam17654
Location:94 → 218

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cl17169
Location:54 → 96

RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

61819549..61833094 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040683793.2 → XP_040539727.1 tRNA selenocysteine 1-associated protein 1 isoform X3

Conserved Domains (2) summary

pfam17654
Location:94 → 218

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cl17169
Location:54 → 96

RRM_SF; RNA recognition motif (RRM) superfamily
XM_040683762.2 → XP_040539696.1 tRNA selenocysteine 1-associated protein 1 isoform X1

UniProtKB/TrEMBL

A0A1D5NX87

Conserved Domains (2) summary

pfam17654
Location:161 → 258

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cd12612
Location:54 → 135

RRM2_SECp43; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43)
XM_040683751.2 → XP_040539685.1 tRNA selenocysteine 1-associated protein 1 isoform X1

UniProtKB/TrEMBL

A0A1D5NX87

Conserved Domains (2) summary

pfam17654
Location:161 → 258

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cd12612
Location:54 → 135

RRM2_SECp43; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43)
XM_046924229.1 → XP_046780185.1 tRNA selenocysteine 1-associated protein 1 isoform X3
XM_040683773.2 → XP_040539707.1 tRNA selenocysteine 1-associated protein 1 isoform X2

Conserved Domains (2) summary

pfam17654
Location:100 → 224

Trnau1ap; Selenocysteine tRNA 1 associated proteins

cl17169
Location:60 → 102

RRM_SF; RNA recognition motif (RRM) superfamily
XM_046924228.1 → XP_046780184.1 tRNA selenocysteine 1-associated protein 1 isoform X3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

61768494..61782017 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046911414.1 → XP_046767370.1 tRNA selenocysteine 1-associated protein 1 isoform X3
XM_046911412.1 → XP_046767368.1 tRNA selenocysteine 1-associated protein 1 isoform X1

UniProtKB/TrEMBL

A0A1D5NX87
XM_046911411.1 → XP_046767367.1 tRNA selenocysteine 1-associated protein 1 isoform X1

UniProtKB/TrEMBL

A0A1D5NX87
XM_046911413.1 → XP_046767369.1 tRNA selenocysteine 1-associated protein 1 isoform X2
XM_046911410.1 → XP_046767366.1 tRNA selenocysteine 1-associated protein 1 isoform X1

UniProtKB/TrEMBL

A0A1D5NX87
XM_046911415.1 → XP_046767371.1 tRNA selenocysteine 1-associated protein 1 isoform X3