U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ASPH aspartate beta-hydroxylase [ Gallus gallus (chicken) ]

    Gene ID: 421142, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Symbol
    ASPHprovided by CGNC
    Full Name
    aspartate beta-hydroxylaseprovided by CGNC
    Primary source
    CGNC:11539
    See related
    Ensembl:ENSGALG00010003960
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ASPH in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (112985655..113089736, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (112991464..113096521, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101750226 Neighboring gene uncharacterized LOC107052736 Neighboring gene clavesin 1 Neighboring gene Na+/K+ transporting ATPase interacting 3 Neighboring gene gamma-glutamyl hydrolase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-aspartic acid 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-aspartic acid hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    aspartyl/asparaginyl beta-hydroxylase
    XP_040522175.1
    XP_040522176.1
    XP_040522177.1
    XP_040522178.1
    XP_040522179.1
    XP_040522180.1
    XP_040522182.1
    XP_040522183.1
    XP_040522184.1
    XP_040522188.1
    XP_040522189.1
    XP_040552479.1
    XP_040552480.1
    XP_040552481.1
    XP_040552482.1
    XP_040552483.1
    XP_040552484.1
    XP_040552486.1
    XP_040552487.1
    XP_040552488.1
    XP_040552491.1
    XP_040552492.1
    XP_046767790.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      112985655..113089736 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040696557.2 → XP_040552491.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

      UniProtKB/TrEMBL
      A0A8V0XI54, A0A8V0XMH1
      Related
      ENSGALP00010005420.1, ENSGALT00010009173.1
      Conserved Domains (5) summary
      TIGR02521
      Location:384 → 489
      type_IV_pilW; type IV pilus biogenesis/stability protein PilW
      TIGR02795
      Location:292 → 405
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 247
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:373 → 398
      TPR; TPR repeat [structural motif]
      cl40423
      Location:535 → 695
      cupin_RmlC-like; RmlC-like cupin superfamily

    2. XM_040696554.2 → XP_040552488.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (5) summary
      TIGR02521
      Location:403 → 508
      type_IV_pilW; type IV pilus biogenesis/stability protein PilW
      TIGR02795
      Location:311 → 424
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 265
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:392 → 417
      TPR; TPR repeat [structural motif]
      cl40423
      Location:554 → 714
      cupin_RmlC-like; RmlC-like cupin superfamily

    3. XM_040696550.2 → XP_040552484.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:346 → 459
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 269
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:427 → 452
      TPR; TPR repeat [structural motif]
      cl40423
      Location:589 → 749
      cupin_RmlC-like; RmlC-like cupin superfamily

    4. XM_040696546.2 → XP_040552480.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Related
      ENSGALP00010005419.1, ENSGALT00010009172.1
      Conserved Domains (4) summary
      TIGR02795
      Location:365 → 478
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 288
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:446 → 471
      TPR; TPR repeat [structural motif]
      cl40423
      Location:608 → 768
      cupin_RmlC-like; RmlC-like cupin superfamily

    5. XM_040696553.2 → XP_040552487.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:326 → 439
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 280
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:407 → 432
      TPR; TPR repeat [structural motif]
      cl40423
      Location:569 → 729
      cupin_RmlC-like; RmlC-like cupin superfamily

    6. XM_040696548.2 → XP_040552482.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:361 → 474
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 284
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:442 → 467
      TPR; TPR repeat [structural motif]
      cl40423
      Location:604 → 764
      cupin_RmlC-like; RmlC-like cupin superfamily

    7. XM_040696545.2 → XP_040552479.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Related
      ENSGALP00010005417.1, ENSGALT00010009169.1
      Conserved Domains (4) summary
      TIGR02795
      Location:380 → 493
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 303
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:461 → 486
      TPR; TPR repeat [structural motif]
      cl40423
      Location:623 → 783
      cupin_RmlC-like; RmlC-like cupin superfamily

    8. XM_040696558.2 → XP_040552492.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (5) summary
      TIGR02521
      Location:369 → 474
      type_IV_pilW; type IV pilus biogenesis/stability protein PilW
      TIGR02795
      Location:277 → 390
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:14 → 232
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:358 → 383
      TPR; TPR repeat [structural motif]
      cl40423
      Location:520 → 680
      cupin_RmlC-like; RmlC-like cupin superfamily

    9. XM_040696552.2 → XP_040552486.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:331 → 444
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:14 → 254
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:412 → 437
      TPR; TPR repeat [structural motif]
      cl40423
      Location:574 → 734
      cupin_RmlC-like; RmlC-like cupin superfamily

    10. XM_040696549.2 → XP_040552483.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

      UniProtKB/TrEMBL
      A0A8V0XI50, A0A8V0XMH1
      Related
      ENSGALP00010005415.1, ENSGALT00010009164.1
      Conserved Domains (4) summary
      TIGR02795
      Location:350 → 463
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:14 → 273
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:431 → 456
      TPR; TPR repeat [structural motif]
      cl40423
      Location:593 → 753
      cupin_RmlC-like; RmlC-like cupin superfamily

    11. XM_040696547.2 → XP_040552481.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

      UniProtKB/TrEMBL
      A0A8V0XFE5
      Conserved Domains (4) summary
      TIGR02795
      Location:365 → 478
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:14 → 288
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:446 → 471
      TPR; TPR repeat [structural motif]
      cl40423
      Location:608 → 768
      cupin_RmlC-like; RmlC-like cupin superfamily

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      112991464..113096521 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040666254.2 → XP_040522188.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

      UniProtKB/TrEMBL
      A0A8V0XI54, A0A8V0XMH1
      Conserved Domains (5) summary
      TIGR02521
      Location:384 → 489
      type_IV_pilW; type IV pilus biogenesis/stability protein PilW
      TIGR02795
      Location:292 → 405
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 247
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:373 → 398
      TPR; TPR repeat [structural motif]
      cl40423
      Location:535 → 695
      cupin_RmlC-like; RmlC-like cupin superfamily

    2. XM_040666250.2 → XP_040522184.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (5) summary
      TIGR02521
      Location:403 → 508
      type_IV_pilW; type IV pilus biogenesis/stability protein PilW
      TIGR02795
      Location:311 → 424
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 265
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:392 → 417
      TPR; TPR repeat [structural motif]
      cl40423
      Location:554 → 714
      cupin_RmlC-like; RmlC-like cupin superfamily

    3. XM_040666246.2 → XP_040522180.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:346 → 459
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 269
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:427 → 452
      TPR; TPR repeat [structural motif]
      cl40423
      Location:589 → 749
      cupin_RmlC-like; RmlC-like cupin superfamily

    4. XM_040666242.2 → XP_040522176.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:365 → 478
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 288
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:446 → 471
      TPR; TPR repeat [structural motif]
      cl40423
      Location:608 → 768
      cupin_RmlC-like; RmlC-like cupin superfamily

    5. XM_046911834.1 → XP_046767790.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

      UniProtKB/TrEMBL
      A0A8V0XMH1

    6. XM_040666249.2 → XP_040522183.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:326 → 439
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 280
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:407 → 432
      TPR; TPR repeat [structural motif]
      cl40423
      Location:569 → 729
      cupin_RmlC-like; RmlC-like cupin superfamily

    7. XM_040666244.2 → XP_040522178.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:361 → 474
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 284
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:442 → 467
      TPR; TPR repeat [structural motif]
      cl40423
      Location:604 → 764
      cupin_RmlC-like; RmlC-like cupin superfamily

    8. XM_040666241.2 → XP_040522175.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:380 → 493
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:29 → 303
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:461 → 486
      TPR; TPR repeat [structural motif]
      cl40423
      Location:623 → 783
      cupin_RmlC-like; RmlC-like cupin superfamily

    9. XM_040666255.2 → XP_040522189.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (5) summary
      TIGR02521
      Location:369 → 474
      type_IV_pilW; type IV pilus biogenesis/stability protein PilW
      TIGR02795
      Location:277 → 390
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:14 → 232
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:358 → 383
      TPR; TPR repeat [structural motif]
      cl40423
      Location:520 → 680
      cupin_RmlC-like; RmlC-like cupin superfamily

    10. XM_040666248.2 → XP_040522182.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:331 → 444
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:14 → 254
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:412 → 437
      TPR; TPR repeat [structural motif]
      cl40423
      Location:574 → 734
      cupin_RmlC-like; RmlC-like cupin superfamily

    11. XM_040666245.2 → XP_040522179.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

      UniProtKB/TrEMBL
      A0A8V0XMH1
      Conserved Domains (4) summary
      TIGR02795
      Location:350 → 463
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:14 → 273
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:431 → 456
      TPR; TPR repeat [structural motif]
      cl40423
      Location:593 → 753
      cupin_RmlC-like; RmlC-like cupin superfamily

    12. XM_040666243.2 → XP_040522177.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

      UniProtKB/TrEMBL
      A0A8V0XFE5
      Conserved Domains (4) summary
      TIGR02795
      Location:365 → 478
      tol_pal_ybgF; tol-pal system protein YbgF
      pfam05279
      Location:14 → 288
      Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
      sd00006
      Location:446 → 471
      TPR; TPR repeat [structural motif]
      cl40423
      Location:608 → 768
      cupin_RmlC-like; RmlC-like cupin superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials