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    OC90 otoconin 90 [ Gallus gallus (chicken) ]

    Gene ID: 420326, updated on 3-Dec-2024

    Summary

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    Symbol
    OC90provided by CGNC
    Full Name
    otoconin 90provided by CGNC
    Primary source
    CGNC:12153
    See related
    Ensembl:ENSGALG00010008131
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See OC90 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (140349225..140370009, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (140558253..140580268, complement)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene EFR3 homolog A Neighboring gene HERV-H LTR-associating 1 Neighboring gene potassium voltage-gated channel subfamily Q member 3 Neighboring gene uncharacterized LOC121109570

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent phospholipase A2 activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in arachidonate secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phospholipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    otoconin-90
    Names
    Otoconin-90

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      140349225..140370009 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040695402.1 → XP_040551336.1  otoconin-90 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:347 → 463
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    2. XM_040695401.1 → XP_040551335.1  otoconin-90 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:369 → 485
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    3. XM_046932781.1 → XP_046788737.1  otoconin-90 isoform X6

      UniProtKB/TrEMBL
      A0A8V0XY60, A0A8V0Y4D2

    4. XM_040695400.1 → XP_040551334.1  otoconin-90 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y4D2, A0A8V0Y4D8
      Conserved Domains (1) summary
      cd04707
      Location:370 → 486
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    5. XM_046932792.1 → XP_046788748.1  otoconin-90 isoform X13

      UniProtKB/TrEMBL
      A0A8V0Y4D2

    6. XM_046932787.1 → XP_046788743.1  otoconin-90 isoform X11

      UniProtKB/TrEMBL
      A0A8V0Y0Q8, A0A8V0Y4D2
      Related
      ENSGALP00010010942.1, ENSGALT00010019394.1

    7. XM_015283130.4 → XP_015138616.2  otoconin-90 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:347 → 463
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    8. XM_046932789.1 → XP_046788745.1  otoconin-90 isoform X12

      UniProtKB/TrEMBL
      A0A8V0XW85, A0A8V0Y4D2
      Related
      ENSGALP00010010948.1, ENSGALT00010019400.1

    9. XM_046932770.1 → XP_046788726.1  otoconin-90 isoform X7

      UniProtKB/TrEMBL
      A0A8V0Y4D2

    10. XM_046932763.1 → XP_046788719.1  otoconin-90 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y4D2

    11. XM_046932779.1 → XP_046788735.1  otoconin-90 isoform X9

      UniProtKB/TrEMBL
      A0A8V0Y4D2

    12. XM_015283125.4 → XP_015138611.2  otoconin-90 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:369 → 485
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    13. XM_015283131.4 → XP_015138617.2  otoconin-90 isoform X10

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Related
      ENSGALP00010010940.1, ENSGALT00010019392.1
      Conserved Domains (1) summary
      cd04707
      Location:335 → 451
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    14. XM_003640875.5 → XP_003640923.2  otoconin-90 isoform X6

      UniProtKB/TrEMBL
      A0A8V0XY60, A0A8V0Y4D2
      Related
      ENSGALP00010010951.1, ENSGALT00010019403.1
      Conserved Domains (1) summary
      cd04707
      Location:352 → 468
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    15. XM_015283126.4 → XP_015138612.2  otoconin-90 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:369 → 485
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    16. XM_015283129.4 → XP_015138615.2  otoconin-90 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:353 → 469
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    17. XM_015283124.4 → XP_015138610.2  otoconin-90 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y4D2, A0A8V0Y4D8
      Related
      ENSGALP00010010945.1, ENSGALT00010019397.1
      Conserved Domains (1) summary
      cd04707
      Location:370 → 486
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      140558253..140580268 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040663000.1 → XP_040518934.1  otoconin-90 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:347 → 463
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    2. XM_040662996.1 → XP_040518930.1  otoconin-90 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:369 → 485
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    3. XM_046912100.1 → XP_046768056.1  otoconin-90 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y4D2, Q4F8N2

    4. XM_040662993.1 → XP_040518927.1  otoconin-90 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:370 → 486
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    5. XM_046912103.1 → XP_046768059.1  otoconin-90 isoform X13

      UniProtKB/TrEMBL
      A0A8V0Y4D2

    6. XM_046912101.1 → XP_046768057.1  otoconin-90 isoform X11

      UniProtKB/TrEMBL
      A0A8V0Y4D2

    7. XM_040662999.2 → XP_040518933.1  otoconin-90 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:347 → 463
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    8. XM_046912102.1 → XP_046768058.1  otoconin-90 isoform X12

      UniProtKB/TrEMBL
      A0A8V0Y4D2

    9. XM_046912097.1 → XP_046768053.1  otoconin-90 isoform X7

      UniProtKB/TrEMBL
      A0A8V0Y4D2

    10. XM_046912096.1 → XP_046768052.1  otoconin-90 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Y4D2

    11. XM_046912099.1 → XP_046768055.1  otoconin-90 isoform X9

      UniProtKB/TrEMBL
      A0A8V0Y4D2

    12. XM_040662995.2 → XP_040518929.1  otoconin-90 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:369 → 485
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    13. XM_040663001.2 → XP_040518935.1  otoconin-90 isoform X10

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:335 → 451
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    14. XM_040662998.2 → XP_040518932.1  otoconin-90 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Y4D2, Q4F8N2
      Conserved Domains (1) summary
      cd04707
      Location:352 → 468
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    15. XM_040662994.2 → XP_040518928.1  otoconin-90 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:369 → 485
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    16. XM_040662997.2 → XP_040518931.1  otoconin-90 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:353 → 469
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    17. XM_040662992.2 → XP_040518926.1  otoconin-90 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Y4D2
      Conserved Domains (1) summary
      cd04707
      Location:370 → 486
      otoconin_90; Phospholipase A2-like domains present in otoconin-90 and otoconin-95, mammal proteins that are principal matrix proteins of calcitic otoconia. Interactions involving otoconin-90 may trigger or constitute key events in otoconia formation. The PLA2-like ...

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033644.1: Suppressed sequence

      Description
      NM_001033644.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from zebrafish: oc90 (GeneID:568941).
    Nucleotide Protein Strain
    Heading Accession and Version

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