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    RHBDD2 rhomboid domain containing 2 [ Gallus gallus (chicken) ]

    Gene ID: 417521, updated on 17-Aug-2024

    Summary

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    Symbol
    RHBDD2provided by CGNC
    Full Name
    rhomboid domain containing 2provided by CGNC
    Primary source
    CGNC:66283
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RHBDD2 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (4826600..4833179, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (4555015..4561598, complement)

    Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase 2 Neighboring gene transmembrane protein 120A Neighboring gene cytochrome p450 oxidoreductase Neighboring gene TATA-box binding protein associated factor 15 Neighboring gene matrix metallopeptidase 28 Neighboring gene growth arrest specific 2 like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rhomboid domain-containing protein 2; LOW QUALITY PROTEIN: rhomboid domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4826600..4833179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004946503.5 → XP_004946560.2  LOW QUALITY PROTEIN: rhomboid domain-containing protein 2 isoform X1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4555015..4561598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040687141.2 → XP_040543075.1  rhomboid domain-containing protein 2 isoform X1

      Conserved Domains (1) summary
      COG0705
      Location:2 → 158
      GlpG; Membrane associated serine protease, rhomboid family [Posttranslational modification, protein turnover, chaperones]

    2. XM_040687137.2 → XP_040543071.1  rhomboid domain-containing protein 2 isoform X2

      Conserved Domains (1) summary
      COG0705
      Location:175 → 312
      GlpG; Membrane associated serine protease, rhomboid family [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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