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    LRRTM1 leucine rich repeat transmembrane neuronal 1 [ Gallus gallus (chicken) ]

    Gene ID: 771502, updated on 3-Dec-2024

    Summary

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    Symbol
    LRRTM1provided by CGNC
    Full Name
    leucine rich repeat transmembrane neuronal 1provided by CGNC
    Primary source
    CGNC:11920
    See related
    Ensembl:ENSGALG00010016791
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See LRRTM1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (87157943..87167521)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (86960641..86970203)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110702 Neighboring gene uncharacterized LOC121110704 Neighboring gene catenin alpha 2 Neighboring gene uncharacterized LOC101748980 Neighboring gene uncharacterized LOC112530649

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat transmembrane neuronal protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      87157943..87167521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040699462.2 → XP_040555396.1  leucine-rich repeat transmembrane neuronal protein 1

      UniProtKB/TrEMBL
      A0A8V0YXK3, A0A8V0YZF3
      Conserved Domains (3) summary
      smart00013
      Location:38 → 66
      LRRNT; Leucine rich repeat N-terminal domain
      COG4886
      Location:53 → 316
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:70 → 90
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_015285928.4 → XP_015141414.2  leucine-rich repeat transmembrane neuronal protein 1

      UniProtKB/TrEMBL
      A0A8V0YXK3, A0A8V0YZF3
      Conserved Domains (3) summary
      smart00013
      Location:38 → 66
      LRRNT; Leucine rich repeat N-terminal domain
      COG4886
      Location:53 → 316
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:70 → 90
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_046940568.1 → XP_046796524.1  leucine-rich repeat transmembrane neuronal protein 1

      UniProtKB/TrEMBL
      A0A8V0YXK3, A0A8V0YZF3

    4. XM_040699463.2 → XP_040555397.1  leucine-rich repeat transmembrane neuronal protein 1

      UniProtKB/TrEMBL
      A0A8V0YXK3, A0A8V0YZF3
      Related
      ENSGALP00010023515.1, ENSGALT00010040511.1
      Conserved Domains (3) summary
      smart00013
      Location:38 → 66
      LRRNT; Leucine rich repeat N-terminal domain
      COG4886
      Location:53 → 316
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:70 → 90
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      86960641..86970203
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670317.2 → XP_040526251.1  leucine-rich repeat transmembrane neuronal protein 1

      UniProtKB/TrEMBL
      A0A8V0YXK3, A0A8V0YZF3
      Conserved Domains (3) summary
      smart00013
      Location:38 → 66
      LRRNT; Leucine rich repeat N-terminal domain
      COG4886
      Location:53 → 316
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:70 → 90
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_040670316.2 → XP_040526250.1  leucine-rich repeat transmembrane neuronal protein 1

      UniProtKB/TrEMBL
      A0A8V0YXK3, A0A8V0YZF3
      Conserved Domains (3) summary
      smart00013
      Location:38 → 66
      LRRNT; Leucine rich repeat N-terminal domain
      COG4886
      Location:53 → 316
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:70 → 90
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_046916831.1 → XP_046772787.1  leucine-rich repeat transmembrane neuronal protein 1

      UniProtKB/TrEMBL
      A0A8V0YXK3, A0A8V0YZF3

    4. XM_040670318.2 → XP_040526252.1  leucine-rich repeat transmembrane neuronal protein 1

      UniProtKB/TrEMBL
      A0A8V0YXK3, A0A8V0YZF3
      Conserved Domains (3) summary
      smart00013
      Location:38 → 66
      LRRNT; Leucine rich repeat N-terminal domain
      COG4886
      Location:53 → 316
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:70 → 90
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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