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    ABCA3 ATP binding cassette subfamily A member 3 [ Gallus gallus (chicken) ]

    Gene ID: 416386, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ABCA3provided by CGNC
    Official Full Name
    ATP binding cassette subfamily A member 3provided by CGNC
    Primary source
    CGNC:1393
    See related
    Ensembl:ENSGALG00010018864
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human all
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    Genomic context

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    See ABCA3 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (13581051..13615204, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (13575997..13610740, complement)

    Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene MAPK regulated corepressor interacting protein 2 Neighboring gene zinc finger CCCH domain-containing protein 11A-like Neighboring gene cyclin-F-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-binding cassette sub-family A member 3; phospholipid-transporting ATPase ABCA3
    Names
    ATP-binding cassette, sub-family A (ABC1), member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      13581051..13615204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046900768.1 → XP_046756724.1  phospholipid-transporting ATPase ABCA3 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z1U4, A0A8V0Z896

    2. XM_046900770.1 → XP_046756726.1  phospholipid-transporting ATPase ABCA3 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z1U4, A0A8V0Z896
      Related
      ENSGALP00010027198.1, ENSGALT00010045609.1

    3. XM_046900769.1 → XP_046756725.1  phospholipid-transporting ATPase ABCA3 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z1U4, A0A8V0Z896

    4. XM_414701.8 → XP_414701.6  phospholipid-transporting ATPase ABCA3 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z896
      Related
      ENSGALP00010027192.1, ENSGALT00010045599.1
      Conserved Domains (1) summary
      TIGR01257
      Location:116 → 1705
      rim_protein; retinal-specific rim ABC transporter

    5. XM_046900771.1 → XP_046756727.1  phospholipid-transporting ATPase ABCA3 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z7P3, A0A8V0Z896
      Related
      ENSGALP00010027185.1, ENSGALT00010045584.1

    6. XM_004945434.5 → XP_004945491.3  phospholipid-transporting ATPase ABCA3 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z896
      Conserved Domains (1) summary
      TIGR01257
      Location:116 → 1705
      rim_protein; retinal-specific rim ABC transporter

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      13575997..13610740 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046927779.1 → XP_046783735.1  phospholipid-transporting ATPase ABCA3 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Z896

    2. XM_046927776.1 → XP_046783732.1  phospholipid-transporting ATPase ABCA3 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z896

    3. XM_046927777.1 → XP_046783733.1  phospholipid-transporting ATPase ABCA3 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z896

    4. XM_040683617.2 → XP_040539551.1  phospholipid-transporting ATPase ABCA3 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z896
      Conserved Domains (1) summary
      TIGR01257
      Location:116 → 1705
      rim_protein; retinal-specific rim ABC transporter

    5. XM_046927778.1 → XP_046783734.1  phospholipid-transporting ATPase ABCA3 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z896

    6. XM_040683618.2 → XP_040539552.1  phospholipid-transporting ATPase ABCA3 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z896
      Conserved Domains (1) summary
      TIGR01257
      Location:116 → 1705
      rim_protein; retinal-specific rim ABC transporter
    Nucleotide Protein Strain
    Heading Accession and Version

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