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    COPS7B COP9 signalosome subunit 7B [ Gallus gallus (chicken) ]

    Gene ID: 424933, updated on 3-Dec-2024

    Summary

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    Symbol
    COPS7Bprovided by CGNC
    Full Name
    COP9 signalosome subunit 7Bprovided by CGNC
    Primary source
    CGNC:5861
    See related
    Ensembl:ENSGALG00010017626
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See COPS7B in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (15067957..15081589)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (14861559..14875184)

    Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121111472 Neighboring gene prothymosin, alpha Neighboring gene phosphodiesterase 6D Neighboring gene natriuretic peptide C Neighboring gene DIS3 like 3'-5' exoribonuclease 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in COP9 signalosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COP9 signalosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COP9 signalosome complex subunit 7b
    Names
    COP9 constitutive photomorphogenic homolog subunit 7B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      15067957..15081589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025153764.3 → XP_025009532.2  COP9 signalosome complex subunit 7b isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z1Y4
      Related
      ENSGALP00010025086.1, ENSGALT00010042596.1
      Conserved Domains (1) summary
      smart00088
      Location:224 → 313
      PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

    2. XM_046898823.1 → XP_046754779.1  COP9 signalosome complex subunit 7b isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z3M3

    3. XM_004943374.5 → XP_004943431.1  COP9 signalosome complex subunit 7b isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z3M3
      Related
      ENSGALP00010025082.1, ENSGALT00010042592.1
      Conserved Domains (2) summary
      smart00088
      Location:88 → 177
      PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
      pfam18392
      Location:166 → 215
      CSN7a_helixI; COP9 signalosome complex subunit 7a helix I domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      14861559..14875184
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040678708.2 → XP_040534642.1  COP9 signalosome complex subunit 7b isoform X1

      Conserved Domains (1) summary
      smart00088
      Location:224 → 313
      PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

    2. XM_046924364.1 → XP_046780320.1  COP9 signalosome complex subunit 7b isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z3M3

    3. XM_040678709.2 → XP_040534643.1  COP9 signalosome complex subunit 7b isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z3M3
      Conserved Domains (2) summary
      smart00088
      Location:88 → 177
      PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
      pfam18392
      Location:166 → 215
      CSN7a_helixI; COP9 signalosome complex subunit 7a helix I domain
    Nucleotide Protein
    Heading Accession and Version

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