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    RRH retinal pigment epithelium-derived rhodopsin homolog [ Gallus gallus (chicken) ]

    Gene ID: 771805, updated on 3-Dec-2024

    Summary

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    Symbol
    RRHprovided by CGNC
    Full Name
    retinal pigment epithelium-derived rhodopsin homologprovided by CGNC
    Primary source
    CGNC:9245
    See related
    Ensembl:ENSGALG00010003827
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RRH in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (57619747..57640318, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (57621516..57658444, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene epidermal growth factor Neighboring gene leucine rich repeat, Ig-like and transmembrane domains 3 Neighboring gene GAR1 ribonucleoprotein Neighboring gene complement factor I Neighboring gene phospholipase A2 group XIIA Neighboring gene microRNA 7466

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Opsin photoisomerases in the chick retina and pineal gland: characterization, localization, and circadian regulation. Bailey MJ, et al. Invest Ophthalmol Vis Sci, 2004 Mar. PMID 14985289
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    visual pigment-like receptor peropsin
    Names
    peropsin-like visual pigment

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079759.2 → NP_001073227.1  visual pigment-like receptor peropsin

      See identical proteins and their annotated locations for NP_001073227.1

      Status: PROVISIONAL

      Source sequence(s)
      AY339626
      UniProtKB/TrEMBL
      A0A8V0XHK0, Q69FK3
      Related
      ENSGALP00010005200.1, ENSGALT00010008856.1
      Conserved Domains (1) summary
      pfam00001
      Location:43 → 294
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      57619747..57640318 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046940353.1 → XP_046796309.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    2. XM_046940354.1 → XP_046796310.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      57621516..57658444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046916587.1 → XP_046772543.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    2. XM_046916595.1 → XP_046772551.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    3. XM_046916592.1 → XP_046772548.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    4. XM_046916591.1 → XP_046772547.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    5. XM_046916588.1 → XP_046772544.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    6. XM_046916593.1 → XP_046772549.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    7. XM_046916580.1 → XP_046772536.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    8. XM_046916584.1 → XP_046772540.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    9. XM_046916583.1 → XP_046772539.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    10. XM_046916589.1 → XP_046772545.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    11. XM_046916579.1 → XP_046772535.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    12. XM_046916590.1 → XP_046772546.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    13. XM_046916582.1 → XP_046772538.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    14. XM_046916581.1 → XP_046772537.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    15. XM_046916586.1 → XP_046772542.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    16. XM_046916578.1 → XP_046772534.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    17. XM_046916577.1 → XP_046772533.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    18. XM_046916594.1 → XP_046772550.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9

    19. XM_046916585.1 → XP_046772541.1  visual pigment-like receptor peropsin isoform X1

      UniProtKB/TrEMBL
      A0A8V0XHK0, F1NEL9
    Nucleotide Protein
    Heading Accession and Version

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