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    SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 [ Gallus gallus (chicken) ]

    Gene ID: 418470, updated on 3-Dec-2024

    Summary

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    Symbol
    SAMSN1provided by CGNC
    Full Name
    SAM domain, SH3 domain and nuclear localization signals 1provided by CGNC
    Primary source
    CGNC:11694
    See related
    Ensembl:ENSGALG00010007786
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human all
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    Genomic context

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    See SAMSN1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (98252115..98402329, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (98296956..98446983, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121108993 Neighboring gene heat shock protein family A (Hsp70) member 13 Neighboring gene heat shock transcription factor X6 Neighboring gene uncharacterized LOC121109039 Neighboring gene nuclear receptor interacting protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
    2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SAM domain-containing protein SAMSN-1
    Names
    SAM domain, SH3 domain and nuclear localisation signals, 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006256.3 → NP_001006256.2  SAM domain-containing protein SAMSN-1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000019
      UniProtKB/TrEMBL
      A0A1D5P820, Q5ZLU1
      Related
      ENSGALP00010010140.1, ENSGALT00010018531.1
      Conserved Domains (4) summary
      cd09561
      Location:238 → 303
      SAM_SAMSN1; SAM domain of SAMSN1 subfamily
      smart00454
      Location:240 → 303
      SAM; Sterile alpha motif
      pfam12485
      Location:17 → 163
      SLY; Lymphocyte signaling adaptor protein
      cl17036
      Location:166 → 217
      SH3; Src Homology 3 domain superfamily

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      98252115..98402329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046940198.1 → XP_046796154.1  SAM domain-containing protein SAMSN-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XPN2, A0A8V0XYM0
      Related
      ENSGALP00010010154.1, ENSGALT00010018551.1

    2. XM_046940204.1 → XP_046796160.1  SAM domain-containing protein SAMSN-1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XYM0, A0A8V0Y1V3
      Related
      ENSGALP00010010149.1, ENSGALT00010018542.1

    3. XM_046940208.1 → XP_046796164.1  SAM domain-containing protein SAMSN-1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XYM0
      Related
      ENSGALP00010010151.1, ENSGALT00010018547.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      98296956..98446983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907875.1 → XP_046763831.1  SAM domain-containing protein SAMSN-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XYM0

    2. XM_046907876.1 → XP_046763832.1  SAM domain-containing protein SAMSN-1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XYM0

    3. XM_046907877.1 → XP_046763833.1  SAM domain-containing protein SAMSN-1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XYM0

    4. XM_046907878.1 → XP_046763834.1  SAM domain-containing protein SAMSN-1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0XYM0
    Nucleotide Protein Strain
    Heading Accession and Version

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