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    Mfsd2b MFSD2 lysolipid transporter B, sphingolipid [ Mus musculus (house mouse) ]

    Gene ID: 432628, updated on 24-Dec-2024

    Summary

    Official Symbol
    Mfsd2bprovided by MGI
    Official Full Name
    MFSD2 lysolipid transporter B, sphingolipidprovided by MGI
    Primary source
    MGI:MGI:3583946
    See related
    Ensembl:ENSMUSG00000037336 AllianceGenome:MGI:3583946
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1964
    Summary
    Enables sphingolipid transporter activity. Involved in lipid transport; positive regulation of platelet aggregation; and sphingosine-1-phosphate receptor signaling pathway. Is active in plasma membrane. Is expressed in liver lobe. Orthologous to human MFSD2B (MFSD2 lysolipid transporter B, sphingolipid). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in liver E14.5 (RPKM 21.0), liver E14 (RPKM 17.3) and 5 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Mfsd2b in Genome Data Viewer
    Location:
    12 A1.1; 12 2.11 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (4912438..4924359, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (4862438..4874359, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4023 Neighboring gene FK506 binding protein 1b Neighboring gene WD repeat and coiled coil containing Neighboring gene UBX domain protein 2A Neighboring gene STARR-seq mESC enhancer starr_31460 Neighboring gene STARR-seq mESC enhancer starr_31462 Neighboring gene STARR-seq mESC enhancer starr_31463 Neighboring gene ATPase family, AAA domain containing 2B Neighboring gene STARR-seq mESC enhancer starr_31464 Neighboring gene STARR-positive B cell enhancer ABC_E5317 Neighboring gene predicted gene, 23167

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables sphingolipid transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables sphingolipid transporter activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables sphingolipid transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables sphingolipid transporter activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables symporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in carbohydrate transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in lipid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in lipid transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in lipid transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in lipid transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of platelet aggregation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in sphingosine-1-phosphate receptor signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    sphingosine-1-phosphate transporter MFSD2B
    Names
    mMfsd2b
    major facilitator superfamily domain containing 2B
    major facilitator superfamily domain-containing protein 2b

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033488.2NP_001028660.2  sphingosine-1-phosphate transporter MFSD2B

      Status: VALIDATED

      Source sequence(s)
      CT571254
      Consensus CDS
      CCDS36401.2
      UniProtKB/Swiss-Prot
      Q3T9M1, Q3TRN2, Q3U198
      UniProtKB/TrEMBL
      B8JK43
      Related
      ENSMUSP00000045315.8, ENSMUST00000045921.14
      Conserved Domains (2) summary
      pfam13347
      Location:34467
      MFS_2; MFS/sugar transport protein
      cl21472
      Location:26467
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      4912438..4924359 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515146.2XP_006515209.1  sphingosine-1-phosphate transporter MFSD2B isoform X1

      UniProtKB/TrEMBL
      B8JK42
      Related
      ENSMUSP00000117057.2, ENSMUST00000137337.8
      Conserved Domains (1) summary
      cl28910
      Location:2363
      MFS; Major Facilitator Superfamily