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    A330093E20Rik RIKEN cDNA A330093E20 gene [ Mus musculus (house mouse) ]

    Gene ID: 107003, updated on 17-Aug-2024

    Summary

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    Official Symbol
    A330093E20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A330093E20 geneprovided by MGI
    Primary source
    MGI:MGI:2147325
    See related
    AllianceGenome:MGI:2147325
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in cortex adult (RPKM 3.3), frontal lobe adult (RPKM 3.3) and 11 other tissues See more
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    Genomic context

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    See A330093E20Rik in Genome Data Viewer
    Location:
    18 C; 18 24.34 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (45816554..46178327, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (45683487..46045260, complement)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 Neighboring gene predicted gene, 31907 Neighboring gene predicted gene, 32139 Neighboring gene predicted gene, 46623 Neighboring gene predicted gene, 41718 Neighboring gene STARR-seq mESC enhancer starr_44493 Neighboring gene STARR-seq mESC enhancer starr_44494 Neighboring gene predicted gene, 26262 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:46252362-46252681 Neighboring gene STARR-positive B cell enhancer ABC_E7582 Neighboring gene predicted gene, 52355 Neighboring gene predicted gene, 51427 Neighboring gene tripartite motif-containing 36

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040342.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AC101593, AC129180, AC135110

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      45816554..46178327 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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