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    Cck cholecystokinin [ Mus musculus (house mouse) ]

    Gene ID: 12424, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cckprovided by MGI
    Official Full Name
    cholecystokininprovided by MGI
    Primary source
    MGI:MGI:88297
    See related
    Ensembl:ENSMUSG00000032532 AllianceGenome:MGI:88297
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    This gene encodes a member of the gastrin/cholecystokinin family of proteins. The encoded preproprotein is proteolytically processed to generate multiple protein products, including the peptide hormones cholecystokinin-8, -12, -33, and others. The encoded peptides have been shown to regulate gastric acid secretion and food intake. A sulfated form of cholecystokinin-8 may modulate neuronal activity in the brain. Homozygous knockout mice for this gene exhibit impaired insulin secretion, enhanced insulin sensitivity, and resistance to obesity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2015]
    Expression
    Biased expression in cortex adult (RPKM 201.9), frontal lobe adult (RPKM 179.3) and 6 other tissues See more
    Orthologs
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    Genomic context

    See Cck in Genome Data Viewer
    Location:
    9 72.43 cM; 9 F4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (121318890..121324728, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (121489824..121495694, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene unc-51-like kinase 4 Neighboring gene STARR-positive B cell enhancer ABC_E3868 Neighboring gene VISTA enhancer mm1661 Neighboring gene predicted gene, 34655 Neighboring gene STARR-seq mESC enhancer starr_25526 Neighboring gene STARR-seq mESC enhancer starr_25527 Neighboring gene trafficking protein, kinesin binding 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:121280653-121280762 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:121388759-121388868 Neighboring gene predicted gene, 51661 Neighboring gene predicted gene, 38661 Neighboring gene predicted gene, 47095 Neighboring gene STARR-seq mESC enhancer starr_25538 Neighboring gene lysozyme-like 4, opposite strand Neighboring gene lysozyme-like 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (5) 
    • Targeted (6)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables hormone activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables neuropeptide hormone activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables neuropeptide hormone activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables neuropeptide hormone activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables receptor ligand activity IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within axonogenesis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in cholecystokinin signaling pathway IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    involved_in digestion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in digestion IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within eating behavior IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in eating behavior ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in memory ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of appetite ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of behavioral fear response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of eating behavior ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within neuron migration IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in phospholipase C-activating G protein-coupled receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of behavioral fear response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of glutamate secretion ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of mitochondrial depolarization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of peptidyl-tyrosine phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of protein-containing complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in release of cytochrome c from mitochondria ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in synaptic signaling via neuropeptide ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in visual learning ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in GABA-ergic synapse ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in axon IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in axon IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in axon hillock ISO
    Inferred from Sequence Orthology
    more info
     
    located_in axon initial segment ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in perikaryon ISO
    Inferred from Sequence Orthology
    more info
     
    located_in terminal bouton ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001284508.3NP_001271437.1  cholecystokinin isoform 2 precursor

      See identical proteins and their annotated locations for NP_001271437.1

      Status: VALIDATED

      Source sequence(s)
      AC131660
      Consensus CDS
      CCDS90686.1
      UniProtKB/TrEMBL
      Q8R041
      Related
      ENSMUSP00000150080.2, ENSMUST00000216138.2
      Conserved Domains (1) summary
      cl27628
      Location:471
      Gastrin; Gastrin/cholecystokinin family
    2. NM_001410236.1NP_001397165.1  cholecystokinin isoform 1 preproprotein

      Status: VALIDATED

      Source sequence(s)
      AC131660
      UniProtKB/Swiss-Prot
      P09240, Q53WS9, Q9DCL5
      Related
      ENSMUSP00000149679.2, ENSMUST00000215228.2
    3. NM_031161.5NP_112438.1  cholecystokinin isoform 1 preproprotein

      See identical proteins and their annotated locations for NP_112438.1

      Status: VALIDATED

      Source sequence(s)
      AC131660
      Consensus CDS
      CCDS23631.1
      UniProtKB/Swiss-Prot
      P09240, Q53WS9, Q9DCL5
      Related
      ENSMUSP00000035120.5, ENSMUST00000035120.6
      Conserved Domains (1) summary
      pfam00918
      Location:4115
      Gastrin; Gastrin/cholecystokinin family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      121318890..121324728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)