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    Ctxn1 cortexin 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 29145, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ctxn1provided by RGD
    Official Full Name
    cortexin 1provided by RGD
    Primary source
    RGD:2449
    See related
    EnsemblRapid:ENSRNOG00000073687 AllianceGenome:RGD:2449
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ctxn
    Summary
    Predicted to be located in membrane. Orthologous to human CTXN1 (cortexin 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 158.7), Uterus (RPKM 32.9) and 1 other tissue See more
    Orthologs
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    Genomic context

    See Ctxn1 in Genome Data Viewer
    Location:
    12p12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (7408308..7409919, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (2610465..2612076, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (2534212..2535823)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095870 Neighboring gene transforming growth factor beta receptor 3 like Neighboring gene small nuclear RNA activating complex, polypeptide 2 Neighboring gene translocase of inner mitochondrial membrane 44 Neighboring gene ELAV like RNA binding protein 1 Neighboring gene uncharacterized LOC102552452

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    cortexin-1
    Names
    C-terminal binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109935.1NP_001103405.1  cortexin-1

      See identical proteins and their annotated locations for NP_001103405.1

      Status: VALIDATED

      Source sequence(s)
      CK841592, DY309362, L15011
      UniProtKB/Swiss-Prot
      P41237
      Related
      ENSRNOP00000104095.1, ENSRNOT00000132665.1
      Conserved Domains (1) summary
      pfam11057
      Location:1082
      Cortexin; Cortexin of kidney

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      7408308..7409919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)