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    Plcb4 phospholipase C, beta 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 25031, updated on 27-Nov-2024

    Summary

    Official Symbol
    Plcb4provided by RGD
    Official Full Name
    phospholipase C, beta 4provided by RGD
    Primary source
    RGD:3345
    See related
    EnsemblRapid:ENSRNOG00000033119 AllianceGenome:RGD:3345
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Beta4aa; RATBETA4AA
    Summary
    Enables mitogen-activated protein kinase binding activity. Involved in negative regulation of potassium ion transport. Predicted to be located in dendrite; nucleus; and plasma membrane. Predicted to be active in several cellular components, including glutamatergic synapse; parallel fiber to Purkinje cell synapse; and postsynaptic density. Orthologous to human PLCB4 (phospholipase C beta 4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 141.5), Heart (RPKM 133.5) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Plcb4 in Genome Data Viewer
    Location:
    3q36
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (143405721..143775129)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (122952965..123322522)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (128601163..128971720)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene mRNA turnover protein 4 homolog Neighboring gene uncharacterized LOC120101678 Neighboring gene uncharacterized LOC134486450 Neighboring gene U6 spliceosomal RNA Neighboring gene lysosomal-associated membrane protein family, member 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables mitogen-activated protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables phosphatidylinositol phospholipase C activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables phosphatidylinositol phospholipase C activity IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
     
    located_in dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    located_in glutamatergic synapse IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in glutamatergic synapse ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in parallel fiber to Purkinje cell synapse IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in parallel fiber to Purkinje cell synapse ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in postsynapse ISO
    Inferred from Sequence Orthology
    more info
     
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in postsynaptic density ISO
    Inferred from Sequence Orthology
    more info
     
    located_in postsynaptic density ISO
    Inferred from Sequence Orthology
    more info
     
    located_in smooth endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in smooth endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    located_in smooth endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4
    Names
    PLC-beta-4
    phosphoinositide phospholipase C
    phosphoinositide phospholipase C-beta-4
    NP_077329.2
    XP_006235145.1
    XP_006235147.1
    XP_006235150.1
    XP_006235156.1
    XP_038960245.1
    XP_038960247.1
    XP_038960248.1
    XP_038960249.1
    XP_038960250.1
    XP_038960251.1
    XP_038960252.1
    XP_038960253.1
    XP_038960256.1
    XP_063139199.1
    XP_063139200.1
    XP_063139201.1
    XP_063139202.1
    XP_063139203.1
    XP_063139204.1
    XP_063139205.1
    XP_063139206.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431415.1NP_001418344.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6HQJ1
    2. NM_001431416.1NP_001418345.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      D4A8C5
    3. NM_001431417.1NP_001418346.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      D4A8C5
    4. NM_001431418.1NP_001418347.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      D4A8C5
    5. NM_001431419.1NP_001418348.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6HQJ4
    6. NM_024353.3NP_077329.2  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      O88356, Q9QW07, Q9Z0G6
      UniProtKB/TrEMBL
      F1LNK2
      Conserved Domains (6) summary
      PTZ00121
      Location:8401171
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:703819
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312669
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:915956
      DUF1154; Protein of unknown function (DUF1154)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      143405721..143775129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063283129.1XP_063139199.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      UniProtKB/TrEMBL
      D4A8C5
    2. XM_063283132.1XP_063139202.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      UniProtKB/TrEMBL
      D4A8C5
    3. XM_063283131.1XP_063139201.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      UniProtKB/TrEMBL
      D4A8C5
    4. XM_006235085.5XP_006235147.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      See identical proteins and their annotated locations for XP_006235147.1

      UniProtKB/TrEMBL
      A0A8I5Y961, D4A8C5
      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    5. XM_039104325.2XP_038960253.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      UniProtKB/TrEMBL
      A0A8I5Y961, D4A8C5
      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    6. XM_063283134.1XP_063139204.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X2

      UniProtKB/TrEMBL
      A6HQJ1
      Related
      ENSRNOP00000087693.2, ENSRNOT00000097572.2
    7. XM_039104323.2XP_038960251.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      UniProtKB/TrEMBL
      A0A8I5Y961, D4A8C5
      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    8. XM_039104321.2XP_038960249.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    9. XM_039104317.2XP_038960245.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    10. XM_006235083.5XP_006235145.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      Related
      ENSRNOP00000045972.3, ENSRNOT00000045393.6
      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    11. XM_063283136.1XP_063139206.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X3

    12. XM_063283135.1XP_063139205.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X2

      Related
      ENSRNOP00000076875.2, ENSRNOT00000105709.2
    13. XM_006235094.5XP_006235156.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X4

      Related
      ENSRNOP00000048553.4, ENSRNOT00000042853.7
      Conserved Domains (7) summary
      cd00275
      Location:702818
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312668
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      PLN02228
      Location:218807
      PLN02228; Phosphoinositide phospholipase C
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      pfam06631
      Location:914954
      DUF1154; Protein of unknown function (DUF1154)
      pfam09279
      Location:221312
      EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like
      pfam12474
      Location:10481160
      PKK; Polo kinase kinase
    14. XM_039104322.2XP_038960250.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      UniProtKB/TrEMBL
      A0A8I5Y961, D4A8C5
      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    15. XM_039104320.2XP_038960248.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      UniProtKB/TrEMBL
      A0A8I5Y961, D4A8C5
      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    16. XM_039104324.2XP_038960252.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      UniProtKB/TrEMBL
      A0A8I5Y961, D4A8C5
      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    17. XM_006235088.5XP_006235150.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      See identical proteins and their annotated locations for XP_006235150.1

      UniProtKB/TrEMBL
      A0A8I5Y961, D4A8C5
      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    18. XM_063283133.1XP_063139203.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X2

      UniProtKB/TrEMBL
      A6HQJ1
    19. XM_039104319.2XP_038960247.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      UniProtKB/TrEMBL
      A0A8I5Y961, D4A8C5
      Conserved Domains (6) summary
      PTZ00121
      Location:8591206
      PTZ00121; MAEBL; Provisional
      cd00275
      Location:714830
      C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
      cd08591
      Location:312680
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      cd13361
      Location:17143
      PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
      cd16211
      Location:148300
      EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
      pfam06631
      Location:926967
      DUF1154; Protein of unknown function (DUF1154)
    20. XM_063283130.1XP_063139200.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

      UniProtKB/TrEMBL
      D4A8C5
    21. XM_039104328.2XP_038960256.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X5

      Conserved Domains (4) summary
      PTZ00121
      Location:591938
      PTZ00121; MAEBL; Provisional
      cd08591
      Location:44412
      PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
      PLN02228
      Location:16551
      PLN02228; Phosphoinositide phospholipase C
      pfam06631
      Location:658699
      DUF1154; Protein of unknown function (DUF1154)