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    D12 D12 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34172, updated on 9-Dec-2024

    Summary

    Official Symbol
    D12provided by FlyBase
    Official Full Name
    D12provided by FlyBase
    Primary source
    FLYBASE:FBgn0027490
    Locus tag
    Dmel_CG13400
    See related
    AllianceGenome:FB:FBgn0027490
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13400; Dmel\CG13400; dYeats2; Yeats2
    Summary
    Predicted to enable histone binding activity. Involved in chromatin remodeling. Located in polytene chromosome. Part of ATAC complex. Is expressed in organism. Used to study familial adult myoclonic epilepsy 4. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 4. Orthologous to human YEATS2 (YEATS domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See D12 in Genome Data Viewer
    Location:
    29C4-29C4; 2-32 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (8434058..8437365, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (8434058..8437365, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene A kinase anchor protein 200 Neighboring gene gurken Neighboring gene Chromatin accessibility complex 14kD protein Neighboring gene mutagen-sensitive 201

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in chromatin remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in chromatin remodeling IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of ATAC complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of ATAC complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of ATAC complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    part_of NuA4 histone acetyltransferase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in polytene chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    D12
    Names
    CG13400-PA
    D12-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      8434058..8437365 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135384.3NP_609228.2  D12 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609228.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95R51, Q9VLL1, Q9XZU3
      Related
      FBpp0079312
      Conserved Domains (1) summary
      pfam03366
      Location:275357
      YEATS; YEATS family