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    CG13643 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 50074, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13643provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0040601
    Locus tag
    Dmel_CG13643
    See related
    AllianceGenome:FB:FBgn0040601
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13642; Dmel\CG13643
    Summary
    Predicted to enable chitin binding activity. Predicted to be located in extracellular region. Is expressed in embryonic antennal sense organ; embryonic head sensory system; and larval labral sensory complex. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13643 in Genome Data Viewer
    Location:
    96B4-96B5; 3-86 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (24897685..24906004, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20723407..20731726, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene transfer RNA:Aspartic acid-GTC 1-12 Neighboring gene antisense RNA:CR44267 Neighboring gene Phosphatidylinositol glycan anchor biosynthesis class S

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article
    2. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
    3. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
    4. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article
    5. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13643-PB
    CG13643-PC
    CG13643-PD
    CG13643-PE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      24897685..24906004 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001276009.1 → NP_001262938.1  uncharacterized protein Dmel_CG13643, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262938.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KI11
      Conserved Domains (1) summary
      pfam01607
      Location:63 → 114
      CBM_14; Chitin binding Peritrophin-A domain

    2. NM_001276007.1 → NP_001262936.1  uncharacterized protein Dmel_CG13643, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262936.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VC14
      Conserved Domains (1) summary
      pfam01607
      Location:63 → 114
      CBM_14; Chitin binding Peritrophin-A domain

    3. NM_001276008.1 → NP_001262937.1  uncharacterized protein Dmel_CG13643, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262937.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KHG9
      Conserved Domains (1) summary
      pfam01607
      Location:63 → 126
      CBM_14; Chitin binding Peritrophin-A domain

    4. NM_143996.3 → NP_652253.1  uncharacterized protein Dmel_CG13643, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_652253.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VC14
      Related
      FBpp0297710
      Conserved Domains (1) summary
      pfam01607
      Location:63 → 114
      CBM_14; Chitin binding Peritrophin-A domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4KHG9 A0A0B4KHG9
    A0A0B4KI11 A0A0B4KI11
    Q9VC14 Q9VC14

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