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    CG3919 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39582, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG3919provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0036423
    Locus tag
    Dmel_CG3919
    See related
    AllianceGenome:FB:FBgn0036423
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG3919
    Summary
    Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in germline cell; gonad; organism; and primordial germ cell. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG3919 in Genome Data Viewer
    Location:
    70D7-70D7; 3-42 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (14410626..14412732)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (14403726..14405832)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45233 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR46032 Neighboring gene stonewall Neighboring gene long non-coding RNA:CR46031 Neighboring gene big bang

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of big bang, a novel gene encoding for PDZ domain-containing proteins that are dynamically expressed throughout Drosophila development. Kim SY, et al. Gene Expr Patterns, 2006 Jun. PMID 16423565
    2. Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in Drosophila. Shukla V, et al. G3 (Bethesda), 2018 May 31. PMID 29669801, Free PMC Article
    3. The MADF-BESS domain factor Dip3 potentiates synergistic activation by Dorsal and Twist. Bhaskar V, et al. Gene, 2002 Oct 16. PMID 12459265
    4. Gene duplication, lineage-specific expansion, and subfunctionalization in the MADF-BESS family patterns the Drosophila wing hinge. Shukla V, et al. Genetics, 2014 Feb. PMID 24336749, Free PMC Article
    5. Stonewalling Drosophila stem cell differentiation by epigenetic controls. Maines JZ, et al. Development, 2007 Apr. PMID 17344229

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of transcription regulator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG3919-PB
    CG3919-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      14410626..14412732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001274911.1 → NP_001261840.1  uncharacterized protein Dmel_CG3919, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261840.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PF86
      Conserved Domains (2) summary
      smart00595
      Location:20 → 100
      MADF; subfamily of SANT domain
      pfam02944
      Location:226 → 260
      BESS; BESS motif

    2. NM_140446.3 → NP_648703.4  uncharacterized protein Dmel_CG3919, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648703.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7KUK4
      Conserved Domains (2) summary
      smart00595
      Location:20 → 100
      MADF; subfamily of SANT domain
      pfam02944
      Location:210 → 244
      BESS; BESS motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PF86 M9PF86
    Q7KUK4 Q7KUK4
    Q8T0A1 Q8T0A1

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