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    Mrps31 mitochondrial ribosomal protein S31 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 290850, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Mrps31provided by RGD
    Official Full Name
    mitochondrial ribosomal protein S31provided by RGD
    Primary source
    RGD:1307668
    See related
    EnsemblRapid:ENSRNOG00000011839 AllianceGenome:RGD:1307668
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    S31mt; MRP-S31
    Summary
    Predicted to enable protein domain specific binding activity. Predicted to be located in mitochondrion and nucleolus. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS31 (mitochondrial ribosomal protein S31). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 122.0), Heart (RPKM 116.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Mrps31 in Genome Data Viewer
    Location:
    16q12.5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (76303807..76332970, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (69601349..69621609, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (74467874..74504834, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 20 member 2 Neighboring gene uncharacterized LOC120097400 Neighboring gene small integral membrane protein 19 Neighboring gene uncharacterized LOC120097532 Neighboring gene solute carrier family 25 member 15 Neighboring gene lncRNA derived from hepatocytes Neighboring gene transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 Neighboring gene SUB1 regulator of transcription, pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Imogen 38: a novel 38-kD islet mitochondrial autoantigen recognized by T cells from a newly diagnosed type 1 diabetic patient. Arden SD, et al. J Clin Invest, 1996 Jan 15. PMID 8567980, Free PMC Article
    2. The Chediak-Higashi protein interacts with SNARE complex and signal transduction proteins. Tchernev VT, et al. Mol Med, 2002 Jan. PMID 11984006, Free PMC Article
    3. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853
    4. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
    5. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mitochondrial small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of mitochondrial small ribosomal subunit ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    small ribosomal subunit protein mS31
    Names
    28S ribosomal protein S31, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106091.1 → NP_001099561.1  small ribosomal subunit protein mS31

      See identical proteins and their annotated locations for NP_001099561.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473970
      UniProtKB/Swiss-Prot
      B0BN56
      UniProtKB/TrEMBL
      A0A8I5Y290
      Related
      ENSRNOP00000015790.4, ENSRNOT00000015790.7
      Conserved Domains (1) summary
      pfam15433
      Location:87 → 379
      MRP-S31; Mitochondrial 28S ribosomal protein S31

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      76303807..76332970 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063275251.1 → XP_063131321.1  small ribosomal subunit protein mS31 isoform X1

      UniProtKB/Swiss-Prot
      B0BN56
      UniProtKB/TrEMBL
      A0A8I5Y290
      Related
      ENSRNOP00000077968.2, ENSRNOT00000111625.2

    2. XM_063275252.1 → XP_063131322.1  small ribosomal subunit protein mS31 isoform X1

      UniProtKB/Swiss-Prot
      B0BN56
      UniProtKB/TrEMBL
      A0A8I5Y290

    3. XM_063275253.1 → XP_063131323.1  small ribosomal subunit protein mS31 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B0BN56.1 GenPept UniProtKB/Swiss-Prot:B0BN56

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