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    CG9899 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37676, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG9899provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034829
    Locus tag
    Dmel_CG9899
    See related
    AllianceGenome:FB:FBgn0034829
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    dctr9; Dmel\CG9899
    Summary
    Predicted to enable RNA polymerase II complex binding activity and SH2 domain binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II and transcription elongation by RNA polymerase II. Predicted to be located in euchromatin. Predicted to be part of Cdc73/Paf1 complex. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG9899 in Genome Data Viewer
    Location:
    59D1-59D1; 2-102 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (23153854..23162077)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (19041377..19049600)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Kinesin-like protein at 59D Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene sidestep V Neighboring gene uncharacterized protein Neighboring gene Large Subunit 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cytoplasmic polyadenylation element binding protein is a conserved target of tumor suppressor HRPT2/CDC73. Zhang JH, et al. Cell Death Differ, 2010 Oct. PMID 20339377, Free PMC Article
    2. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article
    3. A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. Neely GG, et al. Cell, 2010 Apr 2. PMID 20371351, Free PMC Article
    4. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article
    5. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables SH2 domain binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transcription elongation by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of Cdc73/Paf1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in euchromatin ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG9899-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      23153854..23162077
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137920.3 → NP_611764.1  uncharacterized protein Dmel_CG9899 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611764.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NNX1, Q9W1T9
      Related
      FBpp0071879
      Conserved Domains (4) summary
      COG0457
      Location:174 → 443
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR02917
      Location:275 → 735
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:580 → 605
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:125 → 191
      TPR_11; TPR repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W1T9 Q9W1T9

    Gene LinkOut

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