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    Rimkla ribosomal modification protein rimK-like family member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313553, updated on 14-Nov-2024

    Summary

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    Official Symbol
    Rimklaprovided by RGD
    Official Full Name
    ribosomal modification protein rimK-like family member Aprovided by RGD
    Primary source
    RGD:1306880
    See related
    EnsemblRapid:ENSRNOG00000008625 AllianceGenome:RGD:1306880
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306880
    Summary
    Predicted to enable N-acetyl-L-aspartate-L-glutamate ligase activity. Predicted to be involved in protein modification process. Predicted to be located in cytoplasm. Orthologous to human RIMKLA (ribosomal modification protein rimK like family member A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 71.3), Heart (RPKM 15.8) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rimkla in Genome Data Viewer
    Location:
    5q36
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (138357463..138384132, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (133072179..133098840, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (138518559..138545577, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene zinc finger, MYND-type containing 12 Neighboring gene phosphopantothenoylcysteine synthetase Neighboring gene forkhead box J3 Neighboring gene ribosomal protein S27a, pseudogene 1 Neighboring gene ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Molecular identification of N-acetylaspartylglutamate synthase and beta-citrylglutamate synthase. Collard F, et al. J Biol Chem, 2010 Sep 24. PMID 20657015, Free PMC Article
    2. N-acetylaspartylglutamate synthetase II synthesizes N-acetylaspartylglutamylglutamate. Lodder-Gadaczek J, et al. J Biol Chem, 2011 May 13. PMID 21454531, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables N-acetyl-L-aspartate-L-glutamate ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables N-acetyl-L-aspartate-L-glutamate ligase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: N-acetylaspartylglutamate synthase A
    Names
    N-acetylaspartylglutamate synthase A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      138357463..138384132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_056985553.2 → XP_056841533.1  LOW QUALITY PROTEIN: N-acetylaspartylglutamate synthase A

      Related
      ENSRNOP00000011586.5, ENSRNOT00000011586.8
    Nucleotide Protein Strain
    Heading Accession and Version

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    Chemical Information
    Molecular Biology Databases
    Research Materials