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    Gm3716 predicted gene 3716 [ Mus musculus (house mouse) ]

    Gene ID: 100042198, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm3716provided by MGI
    Official Full Name
    predicted gene 3716provided by MGI
    Primary source
    MGI:MGI:3781892
    See related
    Ensembl:ENSMUSG00000105402 AllianceGenome:MGI:3781892
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1683
    Expression
    Biased expression in kidney adult (RPKM 1.3), CNS E11.5 (RPKM 0.2) and 8 other tissues See more
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    Genomic context

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    See Gm3716 in Genome Data Viewer
    Location:
    5 C3.1; 5 32.92 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (64751206..64768042, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (64593863..64610699, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:64888210-64888393 Neighboring gene STARR-seq mESC enhancer starr_13213 Neighboring gene STARR-seq mESC enhancer starr_13214 Neighboring gene STARR-positive B cell enhancer mm9_chr5:64897438-64897739 Neighboring gene predicted gene, 52815 Neighboring gene STARR-seq mESC enhancer starr_13217 Neighboring gene predicted gene, 31423 Neighboring gene STARR-seq mESC enhancer starr_13218 Neighboring gene STARR-positive B cell enhancer ABC_E4756 Neighboring gene STARR-seq mESC enhancer starr_13221 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:65017708-65017817 Neighboring gene STARR-seq mESC enhancer starr_13223 Neighboring gene predicted gene, 54285 Neighboring gene STARR-positive B cell enhancer mm9_chr5:65053140-65053441 Neighboring gene STARR-positive B cell enhancer mm9_chr5:65053800-65054101 Neighboring gene STARR-seq mESC enhancer starr_13227 Neighboring gene STARR-seq mESC enhancer starr_13228 Neighboring gene uncharacterized LOC105244755 Neighboring gene STARR-seq mESC enhancer starr_13234 Neighboring gene STARR-seq mESC enhancer starr_13235 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:65155737-65155920 Neighboring gene predicted gene, 54286

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Tagging genes with cassette-exchange sites. Cobellis G, et al. Nucleic Acids Res, 2005 Mar 1. PMID 15741177, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045078.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122043
      Related
      ENSMUST00000198582.6

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      64751206..64768042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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