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    Rbm13 RNA-binding motif protein 13 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31818, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rbm13provided by FlyBase
    Official Full Name
    RNA-binding motif protein 13provided by FlyBase
    Primary source
    FLYBASE:FBgn0030067
    Locus tag
    Dmel_CG10648
    See related
    AllianceGenome:FB:FBgn0030067
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG10648; Dmel\CG10648; RBM13
    Summary
    Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human MAK16 (MAK16 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Rbm13 in Genome Data Viewer
    Location:
    8B7-8B7; 1-25 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (8901699..8903761)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (8795732..8797794)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Moesin Neighboring gene Uroporphyrinogen III synthase 1 Neighboring gene long non-coding RNA:CR44111 Neighboring gene enhancer of rudimentary Neighboring gene retinal degeneration A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Joint estimates of quantitative trait locus effect and frequency using synthetic recombinant populations of Drosophila melanogaster. Macdonald SJ, et al. Genetics, 2007 Jun. PMID 17435224, Free PMC Article
    2. p53- and ERK7-dependent ribosome surveillance response regulates Drosophila insulin-like peptide secretion. Hasygar K, et al. PLoS Genet, 2014 Nov. PMID 25393288, Free PMC Article
    3. Genomic organization of gypsy chromatin insulators in Drosophila melanogaster. Ramos E, et al. Genetics, 2006 Apr. PMID 16452134, Free PMC Article
    4. RNAi living-cell microarrays for loss-of-function screens in Drosophila melanogaster cells. Wheeler DB, et al. Nat Methods, 2004 Nov. PMID 15782175
    5. Proximity labeling reveals novel interactomes in live Drosophila tissue. Mannix KM, et al. Development, 2019 Jul 18. PMID 31208963, Free PMC Article

    See all (32) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in maturation of 5.8S rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in maturation of LSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding motif protein 13
    Names
    CG10648-PA
    CG10648-PB
    Rbm13-PA
    Rbm13-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      8901699..8903761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001298097.1 → NP_001285026.1  RNA-binding motif protein 13, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285026.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W3B2
      Conserved Domains (3) summary
      PLN00040
      Location:1 → 225
      PLN00040; Protein MAK16 homolog; Provisional
      pfam01778
      Location:6 → 115
      Ribosomal_L28e; Ribosomal L28e protein family
      pfam04874
      Location:139 → 241
      Mak16; Mak16 protein C-terminal region

    2. NM_132280.5 → NP_572508.1  RNA-binding motif protein 13, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572508.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9W3B2
      Related
      FBpp0071198
      Conserved Domains (3) summary
      PLN00040
      Location:1 → 225
      PLN00040; Protein MAK16 homolog; Provisional
      pfam01778
      Location:6 → 115
      Ribosomal_L28e; Ribosomal L28e protein family
      pfam04874
      Location:139 → 241
      Mak16; Mak16 protein C-terminal region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W3B2 Q9W3B2

    Gene LinkOut

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