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    CG42820 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34161, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CG42820provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0262002
    Locus tag
    Dmel_CG42820
    See related
    AllianceGenome:FB:FBgn0262002
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13394; Dmel\CG42820
    Old locus tag
    Dmel_CG13394
    Orthologs
    all
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    Genomic context

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    See CG42820 in Genome Data Viewer
    Location:
    29C1-29C1; 2-32 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (8389881..8392398, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (8389881..8392398, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene small nuclear RNA U6atac Neighboring gene Accessory gland protein 29AB Neighboring gene lectin-29Ca

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiling of U12-type spliceosome mutant Drosophila reveals widespread changes in metabolic pathways. Pessa HK, et al. PLoS One, 2010 Oct 11. PMID 20949011, Free PMC Article
    2. Comparative genomics of accessory gland protein genes in Drosophila melanogaster and D. pseudoobscura. Wagstaff BJ, et al. Mol Biol Evol, 2005 Apr. PMID 15601888
    3. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
    5. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42820-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      8389881..8392398 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_205937.1 → NP_995659.1  uncharacterized protein Dmel_CG42820 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_995659.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7KTH6, Q8MZE5
      Conserved Domains (2) summary
      pfam15994
      Location:46 → 252
      DUF4770; Domain of unknown function (DUF4770)
      pfam15995
      Location:517 → 676
      DUF4771; Domain of unknown function (DUF4771)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7KTH6 Q7KTH6

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