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    NUTM2F NUT family member 2F [ Homo sapiens (human) ]

    Gene ID: 54754, updated on 10-Dec-2024

    Summary

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    Official Symbol
    NUTM2Fprovided by HGNC
    Official Full Name
    NUT family member 2Fprovided by HGNC
    Primary source
    HGNC:HGNC:23450
    See related
    Ensembl:ENSG00000130950 AllianceGenome:HGNC:23450
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NUTMF; FAM22F
    Expression
    Biased expression in testis (RPKM 1.2), skin (RPKM 0.1) and 2 other tissues See more
    Orthologs
    all
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    Genomic context

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    See NUTM2F in Genome Data Viewer
    Location:
    9q22.32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (94318198..94328644, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (106487812..106498251, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (97080480..97090926, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2603 Neighboring gene uncharacterized LOC124902332 Neighboring gene NANOG hESC enhancer GRCh37_chr9:97012845-97013355 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr9:97021099-97021744 and GRCh37_chr9:97021745-97022391 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:97022392-97023037 Neighboring gene zinc finger protein 169 Neighboring gene NANOG hESC enhancer GRCh37_chr9:97044568-97045069 Neighboring gene voltage dependent anion channel 1 pseudogene 11 Neighboring gene uncharacterized LOC105376154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:97080767-97081446 Neighboring gene uncharacterized LOC124902217 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20055 Neighboring gene uncharacterized LOC100132077 Neighboring gene proline-rich nuclear receptor coactivator 2-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:97103095-97103595

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Identification and functional characterization of transcriptional activators in human cells. Alerasool N, et al. Mol Cell, 2022 Feb 3. PMID 35016035
    2. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. Yang X, et al. Cell, 2016 Feb 11. PMID 26871637, Free PMC Article
    3. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
    4. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC163262, DKFZp434I1117

    General protein information

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    Preferred Names
    NUT family member 2F
    Names
    family with sequence similarity 22, member F
    protein FAM22F

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_017561.2 → NP_060031.1  NUT family member 2F

      See identical proteins and their annotated locations for NP_060031.1

      Status: VALIDATED

      Source sequence(s)
      AL691447, BC130390
      Consensus CDS
      CCDS47994.1
      UniProtKB/Swiss-Prot
      A1L443, B6ZDF0, Q5SR58, Q5SR59, Q9UFB1
      UniProtKB/TrEMBL
      B7ZLH0
      Related
      ENSP00000253262.4, ENST00000253262.9
      Conserved Domains (1) summary
      pfam12881
      Location:14 → 743
      NUT; NUT protein

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      94318198..94328644 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      106487812..106498251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1L443.2 GenPept UniProtKB/Swiss-Prot:A1L443

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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