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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001271226.2 → NP_001258155.1 chromodomain-helicase-DNA-binding protein 5
Status: VALIDATED
- Source sequence(s)
-
JAXUCZ010000005
- UniProtKB/Swiss-Prot
-
D3ZD32
- Related
- ENSRNOP00000087017.1, ENSRNOT00000112715.2
- Conserved Domains (11) summary
-
- smart00298
Location:590 → 623
- CHROMO; Chromatin organization modifier domain
- cd00046
Location:718 → 876
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd15531
Location:343 → 385
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:416 → 458
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- pfam00176
Location:701 → 997
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1021 → 1136
- Helicase_C; Helicase conserved C-terminal domain
- pfam06375
Location:196 → 296
- BLVR; Bovine leukaemia virus receptor (BLVR)
- pfam06461
Location:1386 → 1527
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1296 → 1356
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:149 → 198
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1726 → 1897
- CHDCT2; CHDCT2 (NUC038) domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCr8
Genomic
-
NC_086023.1 Reference GRCr8
- Range
-
168130851..168181705
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017593639.3 → XP_017449128.1 chromodomain-helicase-DNA-binding protein 5 isoform X1
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_017593647.3 → XP_017449136.1 chromodomain-helicase-DNA-binding protein 5 isoform X8
- UniProtKB/Swiss-Prot
-
D3ZD32
- UniProtKB/TrEMBL
-
A0A8I6A737
- Related
- ENSRNOP00000086830.1, ENSRNOT00000101697.2
-
XM_017593648.3 → XP_017449137.1 chromodomain-helicase-DNA-binding protein 5 isoform X11
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_017593649.3 → XP_017449138.1 chromodomain-helicase-DNA-binding protein 5 isoform X12
- UniProtKB/Swiss-Prot
-
D3ZD32
- Related
- ENSRNOP00000099286.1, ENSRNOT00000170038.1
-
XM_017593640.3 → XP_017449129.1 chromodomain-helicase-DNA-binding protein 5 isoform X2
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_063288457.1 → XP_063144527.1 chromodomain-helicase-DNA-binding protein 5 isoform X13
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_017593642.3 → XP_017449131.1 chromodomain-helicase-DNA-binding protein 5 isoform X4
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_063288455.1 → XP_063144525.1 chromodomain-helicase-DNA-binding protein 5 isoform X9
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_063288458.1 → XP_063144528.1 chromodomain-helicase-DNA-binding protein 5 isoform X14
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_017593643.3 → XP_017449132.1 chromodomain-helicase-DNA-binding protein 5 isoform X5
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_039110813.2 → XP_038966741.1 chromodomain-helicase-DNA-binding protein 5 isoform X10
- UniProtKB/Swiss-Prot
-
D3ZD32
- Conserved Domains (10) summary
-
- PLN03142
Location:696 → 1214
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- PRK13108
Location:1530 → 1680
- PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
- cd15531
Location:343 → 385
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:416 → 458
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd18662
Location:587 → 640
- CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- cd18667
Location:463 → 542
- CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- pfam06461
Location:1386 → 1527
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1296 → 1349
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:144 → 199
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1726 → 1852
- CHDCT2; CHDCT2 (NUC038) domain
-
XM_017593641.3 → XP_017449130.1 chromodomain-helicase-DNA-binding protein 5 isoform X3
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_017593645.3 → XP_017449134.1 chromodomain-helicase-DNA-binding protein 5 isoform X6
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_017593646.3 → XP_017449135.1 chromodomain-helicase-DNA-binding protein 5 isoform X7
- UniProtKB/Swiss-Prot
-
D3ZD32
-
XM_039110815.2 → XP_038966743.1 chromodomain-helicase-DNA-binding protein 5 isoform X16
- Conserved Domains (8) summary
-
- PLN03142
Location:696 → 1214
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- cd15531
Location:343 → 385
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:416 → 458
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd18662
Location:587 → 640
- CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- cd18667
Location:463 → 542
- CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- pfam06461
Location:1389 → 1515
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1296 → 1349
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:144 → 199
- CHDNT; CHDNT (NUC034) domain
-
XM_017593644.3 → XP_017449133.1 chromodomain-helicase-DNA-binding protein 5 isoform X15
- UniProtKB/TrEMBL
-
A0A0H2UHP5
- Related
- ENSRNOP00000084279.2, ENSRNOT00000101172.2