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    2810025M15Rikl RIKEN cDNA 2810025M15 gene like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680254, updated on 17-Aug-2024

    Summary

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    Official Symbol
    2810025M15Riklprovided by RGD
    Official Full Name
    RIKEN cDNA 2810025M15 gene likeprovided by RGD
    Primary source
    RGD:1594177
    See related
    AllianceGenome:RGD:1594177
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Testes (RPKM 121.4), Lung (RPKM 63.8) and 9 other tissues See more
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    Genomic context

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    See 2810025M15Rikl in Genome Data Viewer
    Location:
    13q22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (72103047..72109673)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (69569485..69576111)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (75060189..75066815)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 2 Neighboring gene serine and arginine rich splicing factor 6, pseudogene 2 Neighboring gene uncharacterized LOC134481517 Neighboring gene uncharacterized LOC134481518 Neighboring gene crystallin zeta like 2 Neighboring gene ATP synthase F(0) complex subunit C2, mitochondrial-like Neighboring gene SEC16 homolog B, endoplasmic reticulum export factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027983.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AW143964, BF387302, CR457757

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      72103047..72109673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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