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    Rsbn1l round spermatid basic protein 1-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311987, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Rsbn1lprovided by RGD
    Official Full Name
    round spermatid basic protein 1-likeprovided by RGD
    Primary source
    RGD:1308748
    See related
    EnsemblRapid:ENSRNOG00000013431 AllianceGenome:RGD:1308748
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308748
    Summary
    Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to be active in nucleus. Orthologous to human RSBN1L (round spermatid basic protein 1 like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 117.2), Spleen (RPKM 101.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Rsbn1l in Genome Data Viewer
    Location:
    4q11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (15014405..15093287)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (14138076..14203972)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (10748745..10809142)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, non-receptor type 12 Neighboring gene uncharacterized LOC120102213 Neighboring gene Alu-mediated CDKN1A/p21 transcriptional regulator Neighboring gene transmembrane protein 60 Neighboring gene putative homeodomain transcription factor 2 Neighboring gene uncharacterized LOC134486554

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    lysine-specific demethylase RSBN1L
    Names
    round spermatid basic protein 1-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001135872.1 → NP_001129344.1  lysine-specific demethylase RSBN1L

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6K5C7, D3ZZH7
      Related
      ENSRNOP00000051335.3, ENSRNOT00000046142.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      15014405..15093287
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063285957.1 → XP_063142027.1  lysine-specific demethylase RSBN1L isoform X1

      UniProtKB/TrEMBL
      A0A8I6AD71
      Related
      ENSRNOP00000089742.1, ENSRNOT00000094077.2

    2. XM_063285958.1 → XP_063142028.1  lysine-specific demethylase RSBN1L isoform X2

      Related
      ENSRNOP00000082614.2, ENSRNOT00000108690.2

    3. XM_039107499.2 → XP_038963427.1  lysine-specific demethylase RSBN1L isoform X3

      UniProtKB/TrEMBL
      A0A8I6G9P4, A6K5C7

    4. XM_063285962.1 → XP_063142032.1  lysine-specific demethylase RSBN1L isoform X6

    5. XM_063285960.1 → XP_063142030.1  lysine-specific demethylase RSBN1L isoform X4

    6. XM_039107500.2 → XP_038963428.1  lysine-specific demethylase RSBN1L isoform X5

      UniProtKB/TrEMBL
      A6K5C8

    7. XM_063285961.1 → XP_063142031.1  lysine-specific demethylase RSBN1L isoform X6

    8. XM_063285963.1 → XP_063142033.1  lysine-specific demethylase RSBN1L isoform X7

    Nucleotide Protein Strain
    Heading Accession and Version

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