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    Fam219b family with sequence similarity 219, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363070, updated on 27-Nov-2024

    Summary

    Official Symbol
    Fam219bprovided by RGD
    Official Full Name
    family with sequence similarity 219, member Bprovided by RGD
    Primary source
    RGD:1310727
    See related
    EnsemblRapid:ENSRNOG00000054468 AllianceGenome:RGD:1310727
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310727
    Summary
    Orthologous to human FAM219B (family with sequence similarity 219 member B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Lung (RPKM 66.4), Adrenal (RPKM 49.7) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Fam219b in Genome Data Viewer
    Location:
    8q24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (66837230..66842819)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (57941327..57946916)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (62316075..62322883)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, H/ACA box 3C Neighboring gene cytochrome c oxidase subunit 5A Neighboring gene transfer RNA alanine (anticodon AGC) 55 Neighboring gene mannose phosphate isomerase Neighboring gene secretory carrier membrane protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108764.2NP_001102234.1  protein FAM219B isoform 3

      See identical proteins and their annotated locations for NP_001102234.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6J4V8
      Related
      ENSRNOP00000112172.1, ENSRNOT00000150485.1
      Conserved Domains (1) summary
      pfam15260
      Location:72128
      FAM219A; Protein family FAM219A
    2. NM_001401179.1NP_001388108.1  protein FAM219B isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A0A0G2JWV6
      Related
      ENSRNOP00000108528.1, ENSRNOT00000127937.1
    3. NM_001401180.1NP_001388109.1  protein FAM219B isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      Related
      ENSRNOP00000070032.2, ENSRNOT00000091204.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      66837230..66842819
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)