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    CG42336 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 36205, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG42336provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0259238
    Locus tag
    Dmel_CG42336
    See related
    AllianceGenome:FB:FBgn0259238
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:AT13707; CG13210; CG13211; Dmel\CG42336
    Old locus tag
    Dmel_CG13210; Dmel_CG13211
    Summary
    Is expressed in adult head; adult heart; anterior endoderm; embryonic/larval midgut; and embryonic/larval midgut primordium. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG42336 in Genome Data Viewer
    Location:
    47F1-47F1; 2-64 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (11294536..11297520, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (7182041..7185025, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 6 Neighboring gene uncharacterized protein Neighboring gene defective in the avoidance of repellents Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Odorant-binding protein 47b Neighboring gene Farnesyl pyrophosphate synthase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Modifiers of muscle and heart cell fate specification identified by gain-of-function screen in Drosophila. Bidet Y, et al. Mech Dev, 2003 Sep. PMID 14550529
    2. A misexpression screen reveals effects of bag-of-marbles and TGF beta class signaling on the Drosophila male germ-line stem cell lineage. Schulz C, et al. Genetics, 2004 Jun. PMID 15238523, Free PMC Article
    3. Characteristics of genes up-regulated and down-regulated after 24 h starvation in the head of Drosophila. Fujikawa K, et al. Gene, 2009 Oct 1. PMID 19573582
    4. Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs. Li H, et al. DNA Res, 2016 Dec. PMID 27559081, Free PMC Article
    5. Latitudinal clines in gene expression and cis-regulatory element variation in Drosophila melanogaster. Juneja P, et al. BMC Genomics, 2016 Nov 28. PMID 27894253, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42336-PB
    CG42336-PC
    CG42336-PD
    CG42336-PE
    CG42336-PF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      11294536..11297520 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_136824.4 → NP_610668.1  uncharacterized protein Dmel_CG42336, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_610668.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8I6

    2. NM_001201978.2 → NP_001188907.1  uncharacterized protein Dmel_CG42336, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188907.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8I8

    3. NM_136823.4 → NP_610667.2  uncharacterized protein Dmel_CG42336, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_610667.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z8I8

    4. NM_165820.2 → NP_725026.1  uncharacterized protein Dmel_CG42336, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_725026.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7JWT7

    5. NM_001144172.2 → NP_001137644.1  uncharacterized protein Dmel_CG42336, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001137644.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7YZF1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1Z8I6 A1Z8I6
    A1Z8I8 A1Z8I8
    B7YZF1 B7YZF1
    Q7JWT7 Q7JWT7

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