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    SNR44 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164950, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR44
    Primary source
    SGD:S000006504
    Locus tag
    YNCL0046W
    See related
    AllianceGenome:SGD:S000006504
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables rRNA pseudouridylation guide activity. Involved in rRNA pseudouridine synthesis. Part of box H/ACA snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR44 in Genome Data Viewer
    Location:
    chromosome: XII
    Exon count:
    1
    Sequence:
    Chromosome: XII; NC_001144.5 (856710..856920)

    Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene glutathione-disulfide reductase GRX8 Neighboring gene uncharacterized protein Neighboring gene ribosomal 40S subunit protein S22B Neighboring gene SCF ubiquitin ligase complex subunit MDM30 Neighboring gene Hsp70 family ATPase SSQ1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001144.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. Torchet C, et al. RNA, 2005 Jun. PMID 15923376, Free PMC Article
    2. Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Schattner P, et al. Nucleic Acids Res, 2004. PMID 15306656, Free PMC Article
    3. A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae. Samarsky DA, et al. Nucleic Acids Res, 1999 Jan 1. PMID 9847166, Free PMC Article
    4. New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA. Piekna-Przybylska D, et al. RNA, 2007 Mar. PMID 17283215, Free PMC Article
    5. Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1. Creamer TJ, et al. PLoS Genet, 2011 Oct. PMID 22028667, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • H/ACA box small nucleolar RNA (snoRNA); guides pseudouridylation of large subunit (LSU) rRNA at position U1056 and small subunit (SSU) rRNA at position U106

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables rRNA pseudouridylation guide activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA pseudouridine synthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleolus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001144.5 Reference assembly

      Range
      856710..856920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132232.1 RNA Sequence

      Status: REVIEWED

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