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    ECM30 Ecm30p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 851156, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ECM30
    Official Full Name
    Ecm30p
    Primary source
    SGD:S000004428
    Locus tag
    YLR436C
    See related
    AllianceGenome:SGD:S000004428; FungiDB:YLR436C; VEuPathDB:YLR436C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to be involved in cell wall organization. Located in cytoplasm. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 105. Orthologous to human HID1 (HID1 domain containing). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See ECM30 in Genome Data Viewer
    Location:
    chromosome: XII
    Exon count:
    1
    Sequence:
    Chromosome: XII; NC_001144.5 (1007421..1011245, complement)

    Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene calcineurin catalytic subunit A Neighboring gene Tsr2p Neighboring gene Dif1p Neighboring gene ornithine-oxo-acid transaminase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001144.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Binding of the Fkh1 Forkhead Associated Domain to a Phosphopeptide within the Mph1 DNA Helicase Regulates Mating-Type Switching in Budding Yeast. Dummer AM, et al. PLoS Genet, 2016 Jun. PMID 27257873, Free PMC Article
    2. Calcofluor antifungal action depends on chitin and a functional high-osmolarity glycerol response (HOG) pathway: evidence for a physiological role of the Saccharomyces cerevisiae HOG pathway under noninducing conditions. García-Rodriguez LJ, et al. J Bacteriol, 2000 May. PMID 10762242, Free PMC Article
    3. A consensus of core protein complex compositions for Saccharomyces cerevisiae. Benschop JJ, et al. Mol Cell, 2010 Jun 25. PMID 20620961
    4. Deubiquitinating enzymes Ubp2 and Ubp15 regulate endocytosis by limiting ubiquitination and degradation of ARTs. Ho HC, et al. Mol Biol Cell, 2017 May 1. PMID 28298493, Free PMC Article
    5. A network of proteins around Rvs167p and Rvs161p, two proteins related to the yeast actin cytoskeleton. Bon E, et al. Yeast, 2000 Sep 30. PMID 10992286

    See all (52) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi medial cisterna IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in Golgi trans cisterna IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm HDA PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Ecm30p
    NP_013540.1
    • hypothetical protein; may play a role in cell wall biosynthesis, mutants have abormal relative levels of mannose and glucose and have Gap1p sorting and transport defects; (GFP)-fusion protein localizes to the cytoplasm

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001144.5 Reference assembly

      Range
      1007421..1011245 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182324.1 → NP_013540.1  TPA: Ecm30p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013540.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VZ70, Q06673
      UniProtKB/TrEMBL
      B3RHU4, N1P093
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q06673.1

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