Fhip2a FHF complex subunit HOOK interacting protein 2A [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Fhip2aprovided by RGD
Official Full Name: FHF complex subunit HOOK interacting protein 2Aprovided by RGD
Primary source: RGD:1306116
See related: EnsemblRapid:ENSRNOG00000017225 AllianceGenome:RGD:1306116
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Fam160b1; RGD1306116
Summary: Orthologous to human FHIP2A (FHF complex subunit HOOK interacting protein 2A). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Thymus (RPKM 98.6), Adrenal (RPKM 89.3) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 1q55

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (266422617..266449206)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (256417533..256444109)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (278198181..278224365)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH141823 (e-PCR)
- UniSTS:223815

RH127489 (e-PCR)
- UniSTS:210799

RH144458 (e-PCR)
- UniSTS:233703

RH143700 (e-PCR)
- UniSTS:232946

General protein information

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Preferred Names: FHF complex subunit HOOK interacting protein 2A

Names: family with sequence similarity 160, member B1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001400898.1 → NP_001387827.1 FHF complex subunit HOOK interacting protein 2A

Status: VALIDATED

Source sequence(s)

JAXUCZ010000001

UniProtKB/TrEMBL

A0A8I5ZMI3, A6JI43, D4A3I5

Related

ENSRNOP00000023247.6, ENSRNOT00000023247.8

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086019.1 Reference GRCr8

Range

266422617..266449206

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039101457.2 → XP_038957385.1 FHF complex subunit HOOK interacting protein 2A isoform X1

UniProtKB/TrEMBL

A0A8I5ZMI3

Conserved Domains (1) summary

pfam10257
Location:20 → 437

RAI16-like; Retinoic acid induced 16-like protein