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    1110004F10Rik RIKEN cDNA 1110004F10 gene [ Mus musculus (house mouse) ]

    Gene ID: 56372, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1110004F10Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1110004F10 geneprovided by MGI
    Primary source
    MGI:MGI:1929274
    See related
    Ensembl:ENSMUSG00000030663 AllianceGenome:MGI:1929274
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Smap; Smacp; sid2057; sid2057p
    Summary
    Orthologous to human C11orf58 (chromosome 11 open reading frame 58). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 81.4), CNS E18 (RPKM 61.8) and 27 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 1110004F10Rik in Genome Data Viewer
    Location:
    7 F1; 7 61.42 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (115680596..115704445)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (116081363..116105210)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_19945 Neighboring gene predicted gene, 51455 Neighboring gene SRY (sex determining region Y)-box 6 Neighboring gene STARR-positive B cell enhancer mm9_chr7:122759944-122760244 Neighboring gene STARR-seq mESC enhancer starr_19946 Neighboring gene STARR-seq mESC enhancer starr_19947 Neighboring gene STARR-seq mESC enhancer starr_19949 Neighboring gene STARR-seq mESC enhancer starr_19950 Neighboring gene STARR-seq mESC enhancer starr_19951 Neighboring gene STARR-seq mESC enhancer starr_19952 Neighboring gene RIKEN cDNA 1700003G18 gene Neighboring gene STARR-seq mESC enhancer starr_19954 Neighboring gene STARR-positive B cell enhancer mm9_chr7:123236585-123236886 Neighboring gene STARR-positive B cell enhancer mm9_chr7:123237410-123237710 Neighboring gene SRY (sex determining region Y)-box 6, opposite strand Neighboring gene nucleoporin 35 pseudogene Neighboring gene pleckstrin homology domain containing, family A member 7 Neighboring gene STARR-seq mESC enhancer starr_19973 Neighboring gene STARR-seq mESC enhancer starr_19974 Neighboring gene STARR-positive B cell enhancer ABC_E4967 Neighboring gene predicted gene 44867 Neighboring gene small nucleolar RNA, C/D box 14A Neighboring gene ribosomal protein S13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A global genomic transcriptional code associated with CNS-expressed genes. Bailey PJ, et al. Exp Cell Res, 2006 Oct 1. PMID 16919269
    2. Phosphoproteomic analysis of the developing mouse brain. Ballif BA, et al. Mol Cell Proteomics, 2004 Nov. PMID 15345747
    3. Hdac4 Interactions in Huntington's Disease Viewed Through the Prism of Multiomics. Federspiel JD, et al. Mol Cell Proteomics, 2019 Aug 9. PMID 31040226, Free PMC Article
    4. Neuron-specific protein network mapping of autism risk genes identifies shared biological mechanisms and disease-relevant pathologies. Murtaza N, et al. Cell Rep, 2022 Nov 22. PMID 36417873
    5. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    small acidic protein
    Names
    sid 2057
    small acidic protein sid2057p

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418530.1 → NP_001405459.1  small acidic protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC160535

    2. NM_001418531.1 → NP_001405460.1  small acidic protein isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC160535
      UniProtKB/TrEMBL
      D3YVR9

    3. NM_001418532.1 → NP_001405461.1  small acidic protein isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC160535
      UniProtKB/TrEMBL
      D3YVS0
      Related
      ENSMUSP00000102218.2, ENSMUST00000106607.2

    4. NM_001418533.1 → NP_001405462.1  small acidic protein isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC160535
      UniProtKB/TrEMBL
      D3YVR9
      Related
      ENSMUSP00000102219.2, ENSMUST00000106608.8

    5. NM_001418534.1 → NP_001405463.1  small acidic protein isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC160535

    6. NM_019772.3 → NP_062746.1  small acidic protein isoform 1

      See identical proteins and their annotated locations for NP_062746.1

      Status: VALIDATED

      Source sequence(s)
      AC160535
      Consensus CDS
      CCDS21766.1
      UniProtKB/Swiss-Prot
      Q9R0P4
      Related
      ENSMUSP00000032899.6, ENSMUST00000032899.12
      Conserved Domains (1) summary
      pfam15477
      Location:27 → 103
      SMAP; Small acidic protein family

    RNA

    1. NR_184775.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC160535

    2. NR_184776.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC160535

    3. NR_184777.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC160535
      Related
      ENSMUST00000151254.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      115680596..115704445
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242811.2 → XP_030098671.1  small acidic protein isoform X1

      Conserved Domains (1) summary
      pfam15477
      Location:8 → 84
      SMAP; Small acidic protein family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9R0P4.1 GenPept UniProtKB/Swiss-Prot:Q9R0P4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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