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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001347122.1 → NP_001334051.1 zinc finger CCCH-type antiviral protein 1 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
- Source sequence(s)
-
AC125530
- Consensus CDS
-
CCDS85033.1
- UniProtKB/TrEMBL
-
D3Z5I1
- Related
- ENSMUSP00000110550.2, ENSMUST00000114900.8
-
NM_028421.1 → NP_082697.1 zinc finger CCCH-type antiviral protein 1 isoform 1
See identical proteins and their annotated locations for NP_082697.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) lacks an exon and its 3' terminal exon extends past a splice site that is used in variant 3. This results in a novel 3' coding region and 3' UTR, compared to variant 3. It encodes isoform 1 which is shorter and has a distinct C-terminus, compared to isoform 3.
- Source sequence(s)
-
AC125530
- Consensus CDS
-
CCDS80522.1
- UniProtKB/Swiss-Prot
- Q3UPF5, Q9CTU4, Q9DBS7
- Related
- ENSMUSP00000144312.2, ENSMUST00000143702.5
- Conserved Domains (2) summary
-
- pfam02825
Location:696 → 772
- WWE; WWE domain
- cl00283
Location:876 → 908
- ADP_ribosyl; ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. ...
-
NM_028864.2 → NP_083140.1 zinc finger CCCH-type antiviral protein 1 isoform 2
See identical proteins and their annotated locations for NP_083140.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks several exons and its 3' terminal exon extends past a splice site that is used in variant 3. This results in a novel 3' coding region and 3' UTR, compared to variant 3. It encodes isoform 2 which is shorter and has a distinct C-terminus, compared to isoform 3.
- Source sequence(s)
-
AK004770
- Consensus CDS
-
CCDS20012.1
- UniProtKB/TrEMBL
-
G3X9X5
- Related
- ENSMUSP00000031850.5, ENSMUST00000031850.10
- Conserved Domains (1) summary
-
- pfam02825
Location:696 → 772
- WWE; WWE domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000072.7 Reference GRCm39 C57BL/6J
- Range
-
38282221..38332859 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006506780.5 → XP_006506843.1 zinc finger CCCH-type antiviral protein 1 isoform X1
- Conserved Domains (4) summary
-
- cd01439
Location:760 → 868
- TCCD_inducible_PARP_like; Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component ...
- pfam02825
Location:581 → 656
- WWE; WWE domain
- pfam18606
Location:5 → 66
- HTH_53; Zap helix turn helix N-terminal domain
- pfam18633
Location:143 → 170
- zf-CCCH_8; Zinc-finger antiviral protein (ZAP) zinc finger domain 3