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    5430401H09Rik RIKEN cDNA 5430401H09 gene [ Mus musculus (house mouse) ]

    Gene ID: 100504461, updated on 22-Oct-2024

    Summary

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    Official Symbol
    5430401H09Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5430401H09 geneprovided by MGI
    Primary source
    MGI:MGI:1918646
    See related
    Ensembl:ENSMUSG00000112569 AllianceGenome:MGI:1918646
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in liver E14 (RPKM 9.8), liver E14.5 (RPKM 8.8) and 1 other tissue See more
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    Genomic context

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    See 5430401H09Rik in Genome Data Viewer
    Location:
    12 A3; 12 13.74 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (32146592..32173823, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (32096593..32123823, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 51992 Neighboring gene predicted gene, 33111 Neighboring gene predicted gene, 51991 Neighboring gene predicted gene, 40374 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma Neighboring gene STARR-positive B cell enhancer ABC_E11507 Neighboring gene STARR-positive B cell enhancer ABC_E11508 Neighboring gene STARR-positive B cell enhancer ABC_E9855

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      32146592..32173823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_872651.4 RNA Sequence

    2. XR_872646.4 RNA Sequence

    3. XR_872648.4 RNA Sequence

    4. XR_872647.4 RNA Sequence

    5. XR_872652.3 RNA Sequence

      Related
      ENSMUST00000334112.1

    6. XR_872654.4 RNA Sequence

      Related
      ENSMUST00000243056.1

    7. XR_872649.3 RNA Sequence

      Related
      ENSMUST00000243708.1

    8. XR_872661.3 RNA Sequence

      Related
      ENSMUST00000334105.1

    9. XR_872656.3 RNA Sequence

      Related
      ENSMUST00000334099.1

    10. XR_872655.3 RNA Sequence

      Related
      ENSMUST00000334109.1

    11. XR_872653.3 RNA Sequence

    12. XR_872645.3 RNA Sequence

      Related
      ENSMUST00000334104.1

    13. XR_872660.3 RNA Sequence

      Related
      ENSMUST00000244533.2

    14. XR_872644.3 RNA Sequence

      Related
      ENSMUST00000245629.2

    15. XR_872657.3 RNA Sequence

      Related
      ENSMUST00000245277.2

    16. XR_381430.4 RNA Sequence

      Related
      ENSMUST00000243723.2

    17. XR_872650.3 RNA Sequence

      Related
      ENSMUST00000241927.2

    18. XR_872658.3 RNA Sequence

      Related
      ENSMUST00000244045.2

    19. XR_381431.4 RNA Sequence

      Related
      ENSMUST00000245090.1

    20. XR_381432.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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