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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001291197.2 → NP_001278126.1 tumor protein D54 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes isoform a.
- Source sequence(s)
-
AL929094
- UniProtKB/TrEMBL
-
Q9CZ22
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 212
- TPD52; Tumour protein D52 family
-
NM_001291200.2 → NP_001278129.1 tumor protein D54 isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1, resulting in an isoform (c) that is shorter than isoform a.
- Source sequence(s)
-
AL929094
- Consensus CDS
-
CCDS71219.1
- UniProtKB/TrEMBL
- Q3TAI4, Q9CZ22
- Related
- ENSMUSP00000000844.9, ENSMUST00000000844.15
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 197
- TPD52; Tumour protein D52 family
-
NM_001291201.2 → NP_001278130.1 tumor protein D54 isoform d
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (d) that is shorter than isoform a.
- Source sequence(s)
-
AL929094
- UniProtKB/TrEMBL
- Q3TUJ9, Q8BKP1
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 163
- TPD52; tumor protein D52 family
-
NM_001291202.2 → NP_001278131.1 tumor protein D54 isoform e
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks an alternate in-frame exon in the central coding region, and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in an isoform (e) that is shorter than isoform a.
- Source sequence(s)
-
AL929094
- Consensus CDS
-
CCDS71220.1
- UniProtKB/TrEMBL
- Q8BKP1, Q9CZ22
- Related
- ENSMUSP00000068888.3, ENSMUST00000069712.9
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 191
- TPD52; Tumour protein D52 family
-
NM_001291203.2 → NP_001278132.1 tumor protein D54 isoform f
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks an alternate in-frame exon in both the central and 3' coding regions, compared to variant 1, resulting in an isoform (f) that is shorter than isoform a.
- Source sequence(s)
-
AL929094
- Consensus CDS
-
CCDS71221.1
- UniProtKB/TrEMBL
- Q3TUJ9, Q9CZ22
- Related
- ENSMUSP00000104428.2, ENSMUST00000108800.8
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 177
- TPD52; Tumour protein D52 family
-
NM_001291204.2 → NP_001278133.1 tumor protein D54 isoform g
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) lacks three alternate exons that result in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (g) has a distinct C-terminus and is shorter than isoform a.
- Source sequence(s)
-
AL929094
- UniProtKB/TrEMBL
- Q3TAI4, Q3TUJ9
-
NM_001373959.2 → NP_001360888.1 tumor protein D54 isoform h
Status: VALIDATED
- Source sequence(s)
-
AL929094
- Consensus CDS
-
CCDS89610.1
- UniProtKB/TrEMBL
- A2AUD5, Q9CZ22
- Related
- ENSMUSP00000104427.4, ENSMUST00000108799.10
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 220
- TPD52; tumor protein D52 family
-
NM_001373960.2 → NP_001360889.1 tumor protein D54 isoform i
Status: VALIDATED
- Source sequence(s)
-
AL929094
- UniProtKB/TrEMBL
-
Q9CZ22
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 201
- TPD52; tumor protein D52 family
-
NM_001373961.2 → NP_001360890.1 tumor protein D54 isoform j
Status: VALIDATED
- Source sequence(s)
-
AL929094
- UniProtKB/TrEMBL
-
Q9CZ22
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 200
- TPD52; tumor protein D52 family
-
NM_001406353.1 → NP_001393282.1 tumor protein D54 isoform k
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NM_001406354.1 → NP_001393283.1 tumor protein D54 isoform l
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NM_001406355.1 → NP_001393284.1 tumor protein D54 isoform m
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NM_001406356.1 → NP_001393285.1 tumor protein D54 isoform n
Status: VALIDATED
- Source sequence(s)
-
AL929094
- Related
- ENSMUSP00000138837.2, ENSMUST00000184849.8
-
NM_001406357.1 → NP_001393286.1 tumor protein D54 isoform o
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NM_001406358.1 → NP_001393287.1 tumor protein D54 isoform p
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NM_001406359.1 → NP_001393288.1 tumor protein D54 isoform q
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NM_001406360.1 → NP_001393289.1 tumor protein D54 isoform r
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NM_001406361.1 → NP_001393290.1 tumor protein D54 isoform s
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NM_001406362.1 → NP_001393291.1 tumor protein D54 isoform t
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NM_001406363.1 → NP_001393292.1 tumor protein D54 isoform u
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NM_025482.4 → NP_079758.2 tumor protein D54 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a.
- Source sequence(s)
-
AL929094
- Consensus CDS
-
CCDS17214.1
- UniProtKB/Swiss-Prot
- Q3TVY1, Q9CYZ2
- UniProtKB/TrEMBL
-
Q9CZ22
- Related
- ENSMUSP00000117690.2, ENSMUST00000149163.8
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 211
- TPD52; Tumour protein D52 family
RNA
-
NR_111899.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) lacks an alternate exon in both the 5' and 3' regions, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL929094
-
NR_176048.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NR_176049.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL929094
-
NR_176050.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL929094
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
181138951..181160103
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006500701.2 → XP_006500764.1 tumor protein D54 isoform X4
- UniProtKB/TrEMBL
-
F6VQ81
- Related
-
ENSMUST00000183956.8
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 139
- TPD52; tumor protein D52 family
-
XM_036162449.1 → XP_036018342.1 tumor protein D54 isoform X3
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 138
- TPD52; tumor protein D52 family
-
XM_036162448.1 → XP_036018341.1 tumor protein D54 isoform X2
- Conserved Domains (1) summary
-
- pfam04201
Location:55 → 158
- TPD52; tumor protein D52 family