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    E130311K13Rik RIKEN cDNA E130311K13 gene [ Mus musculus (house mouse) ]

    Gene ID: 329659, updated on 9-Dec-2024

    Summary

    Official Symbol
    E130311K13Rikprovided by MGI
    Official Full Name
    RIKEN cDNA E130311K13 geneprovided by MGI
    Primary source
    MGI:MGI:3607716
    See related
    Ensembl:ENSMUSG00000048581 AllianceGenome:MGI:3607716
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be involved in negative regulation of ERK1 and ERK2 cascade and regulation of DNA-binding transcription factor activity. Predicted to be located in membrane. Predicted to be active in extracellular space. Orthologous to human C3orf33 (chromosome 3 open reading frame 33). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in bladder adult (RPKM 2.2), frontal lobe adult (RPKM 1.9) and 27 other tissues See more
    Orthologs
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    Genomic context

    See E130311K13Rik in Genome Data Viewer
    Location:
    3 E1; 3 30.08 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (63822103..63836897, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (63914682..63929507, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_07836 Neighboring gene phospholipase C, eta 1 Neighboring gene STARR-seq mESC enhancer starr_07837 Neighboring gene predicted gene, 34379 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:63768480-63768744 Neighboring gene STARR-positive B cell enhancer ABC_E2666 Neighboring gene solute carrier family 33 (acetyl-CoA transporter), member 1 Neighboring gene STARR-seq mESC enhancer starr_07841 Neighboring gene guanine monophosphate synthetase Neighboring gene vomeronasal 2, receptor, pseudogene 3 Neighboring gene vomeronasal 2, receptor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in extracellular space  
    located_in extracellular space  
    located_in extracellular space  
    located_in membrane  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357824.2NP_001344753.1  protein C3orf33 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC116732
    2. NM_177856.6NP_808524.1  protein C3orf33 homolog isoform 1

      See identical proteins and their annotated locations for NP_808524.1

      Status: VALIDATED

      Source sequence(s)
      AC116732
      Consensus CDS
      CCDS38445.1
      UniProtKB/Swiss-Prot
      Q059W9, Q8BN57
      Related
      ENSMUSP00000058114.7, ENSMUST00000061706.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      63822103..63836897 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030252650.2XP_030108510.1  protein C3orf33 homolog isoform X1

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