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    Trav13-5 T cell receptor alpha variable 13-5 [ Mus musculus (house mouse) ]

    Gene ID: 219060, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Trav13-5provided by MGI
    Official Full Name
    T cell receptor alpha variable 13-5provided by MGI
    Primary source
    MGI:MGI:3026946
    See related
    Ensembl:ENSMUSG00000087666 IMGT/GENE-DB:TRAV13-5; AllianceGenome:MGI:3026946
    Gene type
    other
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    B230359F08Rik
    Summary
    Orthologous to human TRAV22 (T cell receptor alpha variable 22). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Trav13-5 in Genome Data Viewer
    Location:
    14 C2; 14 27.52 cM
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (54032912..54033420)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (53795455..53795963)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene T cell receptor alpha chain Neighboring gene T cell receptor alpha variable 12-4 Neighboring gene T cell receptor alpha variable 3-4 Neighboring gene T cell receptor alpha variable 17 Neighboring gene T cell receptor alpha variable 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • T cell receptor alpha variable region 13-5

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007044.1 

      Range
      1367989..1368497
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      54032912..54033420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177626.2: Suppressed sequence

      Description
      NM_177626.2: This RefSeq was permanently suppressed because immunoglobulin and T-cell receptor loci are out of scope for RefSeq transcripts.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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