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    NECTIN3-AS1 NECTIN3 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100506555, updated on 10-Dec-2024

    Summary

    Official Symbol
    NECTIN3-AS1provided by HGNC
    Official Full Name
    NECTIN3 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40813
    See related
    AllianceGenome:HGNC:40813
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PVRL3-AS1
    Expression
    Biased expression in testis (RPKM 2.5), brain (RPKM 0.4) and 5 other tissues See more
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    Genomic context

    See NECTIN3-AS1 in Genome Data Viewer
    Location:
    3q13.13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (111045315..111069959, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (113765744..113790385, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (110764162..110788806, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374037 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:110295653-110296241 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:110317374-110318228 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:110385405-110385904 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:110404170-110404746 Neighboring gene ribosomal protein SA pseudogene 29 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:110607916-110608531 Neighboring gene putative uncharacterized protein LOC151760 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:110683374-110684573 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:110764172-110765371 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14597 Neighboring gene nectin cell adhesion molecule 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:110929660-110930290 Neighboring gene uncharacterized LOC124909493

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045114.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC133477, BM678464, BU852869

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      111045315..111069959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      113765744..113790385 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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