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    LINC01477 long intergenic non-protein coding RNA 1477 [ Homo sapiens (human) ]

    Gene ID: 101927900, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01477provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1477provided by HGNC
    Primary source
    HGNC:HGNC:51119
    See related
    Ensembl:ENSG00000261715 AllianceGenome:HGNC:51119
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01477 in Genome Data Viewer
    Location:
    18q12.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (40066286..40099233)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (40261018..40293966)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (37646250..37679197)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1901 Neighboring gene long intergenic non-protein coding RNA 1902 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:37504594-37505118 Neighboring gene uncharacterized LOC124904349 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:37549588-37550562 Neighboring gene NANOG hESC enhancer GRCh37_chr18:37599592-37600332 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:37621786-37622320 Neighboring gene uncharacterized LOC105372081 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:37700693-37701892 Neighboring gene ribosomal protein L17 pseudogene 45 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:37772736-37773349 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:37773350-37773962 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:37825467-37826666 Neighboring gene uncharacterized LOC105372082

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110791.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC045816
      Related
      ENST00000566101.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      40066286..40099233
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      40261018..40293966
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)