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    STPG2 sperm tail PG-rich repeat containing 2 [ Homo sapiens (human) ]

    Gene ID: 285555, updated on 10-Dec-2024

    Summary

    Official Symbol
    STPG2provided by HGNC
    Official Full Name
    sperm tail PG-rich repeat containing 2provided by HGNC
    Primary source
    HGNC:HGNC:28712
    See related
    Ensembl:ENSG00000163116 AllianceGenome:HGNC:28712
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C4orf37
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See STPG2 in Genome Data Viewer
    Location:
    4q22.3-q23
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (97441249..98143476, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (100756071..101458472, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (98480023..99064627, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 7A2 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:98045039-98045539 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:98060958-98062157 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:98062416-98062997 Neighboring gene uncharacterized LOC124900737 Neighboring gene STPG2 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21731 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:98508983-98510182 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:98554318-98554902 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:98554903-98555487 Neighboring gene Sharpr-MPRA regulatory region 6700 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:98699102-98699602 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:98824980-98825528 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:98845219-98845420 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:98944941-98945440 Neighboring gene crystallin zeta pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:99031922-99032747 Neighboring gene ribosomal protein L5 pseudogene 12 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21732 Neighboring gene uncharacterized LOC105377340 Neighboring gene deoxyuridine triphosphatase pseudogene 8 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:99125201-99125922 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:99181827-99182389 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15576 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15577 Neighboring gene Rap1 GTPase-GDP dissociation stimulator 1 Neighboring gene uncharacterized LOC124900919

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Phenotypes

    BioGRID CRISPR Screen Phenotypes (8 hits/1253 screens)

    EBI GWAS Catalog

    Description
    Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.
    EBI GWAS Catalog

    Interactions

    General protein information

    Preferred Names
    sperm-tail PG-rich repeat-containing protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_174952.3NP_777612.1  sperm-tail PG-rich repeat-containing protein 2

      See identical proteins and their annotated locations for NP_777612.1

      Status: VALIDATED

      Source sequence(s)
      AC019077, AC034154, BC036870
      Consensus CDS
      CCDS3645.1
      UniProtKB/Swiss-Prot
      Q8N412
      Related
      ENSP00000295268.3, ENST00000295268.4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      97441249..98143476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047450118.1XP_047306074.1  sperm-tail PG-rich repeat-containing protein 2 isoform X3

    2. XM_017008049.3XP_016863538.1  sperm-tail PG-rich repeat-containing protein 2 isoform X2

    3. XM_011531886.4XP_011530188.1  sperm-tail PG-rich repeat-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_011530188.1

    4. XM_017008051.3XP_016863540.1  sperm-tail PG-rich repeat-containing protein 2 isoform X6

    5. XM_047450119.1XP_047306075.1  sperm-tail PG-rich repeat-containing protein 2 isoform X4

    6. XM_047450120.1XP_047306076.1  sperm-tail PG-rich repeat-containing protein 2 isoform X5

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      100756071..101458472 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054349785.1XP_054205760.1  sperm-tail PG-rich repeat-containing protein 2 isoform X1

    2. XM_054349787.1XP_054205762.1  sperm-tail PG-rich repeat-containing protein 2 isoform X2

    3. XM_054349788.1XP_054205763.1  sperm-tail PG-rich repeat-containing protein 2 isoform X3

    4. XM_054349791.1XP_054205766.1  sperm-tail PG-rich repeat-containing protein 2 isoform X6

    5. XM_054349789.1XP_054205764.1  sperm-tail PG-rich repeat-containing protein 2 isoform X4

    6. XM_054349790.1XP_054205765.1  sperm-tail PG-rich repeat-containing protein 2 isoform X5

    7. XM_054349786.1XP_054205761.1  sperm-tail PG-rich repeat-containing protein 2 isoform X7

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