cpna-3 VWFA domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: cpna-3
Official Full Name: VWFA domain-containing protein
Primary source: WormBase:WBGene00007221
Locus tag: CELE_C01F6.1
See related: AllianceGenome:WB:WBGene00007221
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See cpna-3 in Genome Data Viewer

Location:: chromosome: IV

Exon count:: 9

Sequence:: Chromosome: IV; NC_003282.8 (9096842..9099370)

Chromosome IV - NC_003282.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

C01F6.1 (e-PCR)
- UniSTS:308874

C01F6.9 (e-PCR)
- UniSTS:320449

STS4-162 (e-PCR)
- UniSTS:242152

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables calcium-dependent phospholipid binding	IBA Inferred from Biological aspect of Ancestor more info
enables calcium-dependent phospholipid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cellular response to calcium ion	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: VWFA domain-containing protein

NP_501584.2

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003282.8 Reference assembly

Range

9096842..9099370

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_069183.7 → NP_501584.2 VWFA domain-containing protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_501584.2

Status: REVIEWED

UniProtKB/TrEMBL

Q17559

Conserved Domains (2) summary

cd04047
Location:139 → 248

C2B_Copine; C2 domain second repeat in Copine

cl00057
Location:303 → 520

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...