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    znf-622 C2H2-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175905, updated on 9-Dec-2024

    Summary

    Official Symbol
    znf-622
    Official Full Name
    C2H2-type domain-containing protein
    Primary source
    WormBase:WBGene00015809
    Locus tag
    CELE_C16A3.4
    See related
    AllianceGenome:WB:WBGene00015809
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, large subunit precursor. Is expressed in intestine; pharynx; and tail. Orthologous to human ZNF622 (zinc finger protein 622). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See znf-622 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    3
    Sequence:
    Chromosome: III; NC_003281.10 (6381634..6382996)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Protein MAK16 homolog Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 Neighboring gene S1 motif domain-containing protein Neighboring gene protein-tyrosine-phosphatase

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in ribosomal large subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    part_of preribosome, large subunit precursor IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    C2H2-type domain-containing protein
    NP_498397.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      6381634..6382996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065996.5NP_498397.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498397.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q18037
      Conserved Domains (3) summary
      smart00451
      Location:68101
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:931
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12756
      Location:164263
      zf-C2H2_2; C2H2 type zinc-finger (2 copies)