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    F41H10.3 PHD-type domain-containing protein;RNA-directed RNA polymerase [ Caenorhabditis elegans ]

    Gene ID: 177319, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F41H10.3
    Official Full Name
    PHD-type domain-containing protein;RNA-directed RNA polymerase
    Primary source
    WormBase:WBGene00018316
    Locus tag
    CELE_F41H10.3
    See related
    AllianceGenome:WB:WBGene00018316
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA-dependent RNA polymerase activity. Predicted to be involved in RNA-templated transcription. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F41H10.3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    12
    Sequence:
    Chromosome: IV; NC_003282.8 (5369801..5374777)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene GRIP domain-containing protein Neighboring gene Vacuolar fusion protein MON1 homolog Neighboring gene Long chain fatty acid elongase 5 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Asymmetric Arginine Dimethylation Modulates Mitochondrial Energy Metabolism and Homeostasis in Caenorhabditis elegans. Sha L, et al. Mol Cell Biol, 2017 Mar 15. PMID 27994012, Free PMC Article
    2. ITSN-1 controls vesicle recycling at the neuromuscular junction and functions in parallel with DAB-1. Wang W, et al. Traffic, 2008 May. PMID 18298590, Free PMC Article
    3. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
    4. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    5. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA-dependent RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PHD-type domain-containing protein;RNA-directed RNA polymerase
    NP_001293756.1
    • Confirmed by transcript evidence
    NP_001360037.1
    • Partially confirmed by transcript evidence
    NP_001368391.1
    • Confirmed by transcript evidence
    NP_001368392.1
    • Confirmed by transcript evidence
    NP_741398.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      5369801..5374777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_171339.8 → NP_741398.1  RNA-directed RNA polymerase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741398.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2L025

    2. NM_001306827.3 → NP_001293756.1  RNA-directed RNA polymerase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001293756.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      V6CLL5

    3. NM_001372817.2 → NP_001360037.1  RNA-directed RNA polymerase [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MQ54

    4. NM_001380225.2 → NP_001368391.1  PHD-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      V6CK94

    5. NM_001380226.1 → NP_001368392.1  PHD-type domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      V6CLM1
    Nucleotide Protein
    Heading Accession and Version

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