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    quuD prophage antitermination protein Q homolog QuuD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945177, updated on 3-Dec-2024

    Summary

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    Official Symbol
    quuD
    Official Full Name
    prophage antitermination protein Q homolog QuuD
    Primary source
    ECOCYC:G6307
    Locus tag
    b0551
    See related
    ASAP:ABE-0001883
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0543; ybcQ
    Summary
    QuuD is a phage antiterminator Q protein family 1 domain member (pfam06530). [More information is available at EcoGene: EG13633]. YbcQ is similar to the bacteriophage 21 Q protein, a transcriptional antiterminator . [More information is available at EcoCyc: G6307].
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    Genomic context

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    Sequence:
    NC_000913.3 (573956..574339)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene NinE family prophage protein Neighboring gene putative nuclease YbcO Neighboring gene crossover junction endodeoxyribonuclease RusA Neighboring gene uncharacterized protein YlcG Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator Neighboring gene putative phage lysis protein Neighboring gene lysozyme

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure of the bacteriophage lambda cohesive end site: location of the sites of terminase binding (cosB) and nicking (cosN). Feiss M, et al. Gene, 1983 Oct. PMID 6315537
    2. Structure of cryptic lambda prophages. Redfield RJ, et al. J Mol Biol, 1987 Dec 5. PMID 2828640
    3. The origin of Q-independent derivatives of phage lambda. Kaiser K. Mol Gen Genet, 1980. PMID 6255285
    4. Defective prophage in Escherichia coli K12 strains. Strathern A, et al. Virology, 1975 Sep. PMID 1101520
    5. Lambda phage DNA sequences affecting the packaging process. Miwa T, et al. Gene, 1983 Oct. PMID 6227527

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of termination of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within single-species biofilm formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in transcription antitermination IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    prophage antitermination protein Q homolog QuuD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      573956..574339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415083.1 prophage antitermination protein Q homolog QuuD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415083.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0H2V6U9, Q1RCY2
      Conserved Domains (1) summary
      pfam06530
      Location:1 → 118
      Phage_antitermQ; Phage antitermination protein Q
    Nucleotide Protein
    Heading Accession and Version

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