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    yfbK IPR002035/DUF3520 domain-containing protein YfbK [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946743, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yfbK
    Official Full Name
    IPR002035/DUF3520 domain-containing protein YfbK
    Primary source
    ECOCYC:G7177
    Locus tag
    b2270
    See related
    ASAP:ABE-0007501
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2264
    Summary
    First 18 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG14095].
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    Genomic context

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    Sequence:
    NC_000913.3 (2383995..2385722, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ribonuclease BN Neighboring gene protease ElaD Neighboring gene putative peptidase YfbL Neighboring gene DUF1877 domain-containing protein YfbM

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    2. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    3. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    IPR002035/DUF3520 domain-containing protein YfbK

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2383995..2385722 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416773.1 IPR002035/DUF3520 domain-containing protein YfbK [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416773.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T6PLI3
      Conserved Domains (3) summary
      cd01465
      Location:215 → 386
      vWA_subgroup; VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b ...
      pfam12034
      Location:392 → 569
      DUF3520; Domain of unknown function (DUF3520)
      pfam12450
      Location:99 → 199
      vWF_A; von Willebrand factor
    Nucleotide Protein
    Heading Accession and Version

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