U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    yfdI serotype-specific glucosyl transferase YfdI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946822, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    yfdI
    Official Full Name
    serotype-specific glucosyl transferase YfdI
    Primary source
    ECOCYC:G7221
    Locus tag
    b2352
    See related
    ASAP:ABE-0007765
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2346; gtrIV; gtrS
    Summary
    GtrAB are highly conserved and the K-12 genes have been shown to be functional in partial converting Shigella flexneri serotype Y strain SFL124 to serotype 4a in conjunction with the serotype-specific glucosyl transferase GtrIV (GtrS) (Adams, 2001). [More information is available at EcoGene: EG14133]. YfdI has similarity to ligases . [More information is available at EcoCyc: G7221].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (2469131..2470462)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene prophage CPS-53 integrase Neighboring gene putative bactoprenol-linked glucose translocase Neighboring gene bactoprenol glucosyl transferase Neighboring gene toxic protein YodE Neighboring gene pseudo Neighboring gene putative tail fiber assembly protein YfdK

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Topological analysis of GtrA and GtrB proteins encoded by the serotype-converting cassette of Shigella flexneri. Korres H, et al. Biochem Biophys Res Commun, 2005 Mar 25. PMID 15708010
    2. Type IV O antigen modification genes in the genome of Shigella flexneri NCTC 8296. Adams MM, et al. Microbiology (Reading), 2001 Apr. PMID 11283281
    3. Serotype-converting bacteriophages and O-antigen modification in Shigella flexneri. Allison GE, et al. Trends Microbiol, 2000 Jan. PMID 10637639
    4. Computation-directed identification of OxyR DNA binding sites in Escherichia coli. Zheng M, et al. J Bacteriol, 2001 Aug. PMID 11443092, Free PMC Article
    5. The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coli. Ogawa T, et al. Mol Microbiol, 2002 Jun. PMID 12068813

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    serotype-specific glucosyl transferase YfdI

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2469131..2470462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416853.1 serotype-specific glucosyl transferase YfdI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416853.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P76507
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.