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    yifL putative lipoprotein YifL [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 1450304, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yifL
    Official Full Name
    putative lipoprotein YifL
    Primary source
    ECOCYC:G0-10471
    Locus tag
    b4558
    See related
    ASAP:ABE-0285079
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3803
    Summary
    First 19 aa are predicted to be a type II signal peptide. [More information is available at EcoGene: EG12353].
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    Genomic context

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    Sequence:
    NC_000913.3 (3994522..3994725)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene adenylate cyclase Neighboring gene frataxin CyaY Neighboring gene protein YzcX Neighboring gene diaminopimelate epimerase Neighboring gene DUF484 domain-containing protein YigA Neighboring gene site-specific tyrosine recombinase Neighboring gene 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
    2. Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. Daniels DL, et al. Science, 1992 Aug 7. PMID 1379743
    3. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    4. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative lipoprotein YifL

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3994522..3994725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_588473.1 putative lipoprotein YifL [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_588473.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9ANM9, A0A8S0FG65
      Conserved Domains (1) summary
      COG5567
      Location:1 → 63
      YifL; Predicted small periplasmic lipoprotein YifL (function unknown0 [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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